build_tree: Build tree connecting clusters at different ranks

Description Usage Arguments Value Examples

View source: R/tree.R

Description

Build tree connecting clusters at different ranks

Usage

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build_tree(object, rmax)

Arguments

object

Object of class scNMFSet

rmax

Maximum rank at which tree branching stops

Value

List containing the tree structure

Examples

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set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
tree

hjunwoo/ccfindR documentation built on July 11, 2019, 6:41 p.m.