build_tree: Build tree connecting clusters at different ranks
In hjunwoo/ccfindR: Cancer Clone Finder
Description
Usage
Arguments
Value
Examples
Description
Build tree connecting clusters at different ranks
Usage
1
build_tree(object, rmax)
Arguments
object
Object of class scNMFSet
rmax
Maximum rank at which tree branching stops
Value
List containing the tree structure
Examples
1
2
3
4
5
6
set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
tree
hjunwoo/ccfindR documentation built on Oct. 4, 2019, 10:31 a.m.
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Description Usage Arguments Value Examples
Description
Build tree connecting clusters at different ranks
Usage
1 | build_tree(object, rmax)
|
Arguments
object |
Object of class |
rmax |
Maximum rank at which tree branching stops |
Value
List containing the tree structure
Examples
1 2 3 4 5 6 | set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
tree
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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