rename_tips: Rename tips of trees with cell types

In hjunwoo/ccfindR: Cancer Clone Finder

Description

Rename tips of trees with cell types

Usage

rename_tips(tree, rank, tip.labels)

Arguments

tree	List containing tree
rank	Rank value of which tip names are to be replaced
tip.labels	Vector of new names for tips

Value

List containing tree with updated tip labels

Examples

set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
tree <- build_tree(s,rmax=5)
tree <- rename_tips(tree,rank=5,tip.labels=letters[seq_len(5)])
tree 

hjunwoo/ccfindR documentation built on Oct. 4, 2019, 10:31 a.m.