cluster_id: Assign cells into clusters

In hjunwoo/ccfindR: Cancer Clone Finder

Description

Use factorization results in an object to assign cells into clusters.

Usage

cluster_id(object, rank = 2)

Arguments

object	Object of class scNMFSet
rank	Rank value whose factor matrices are to be used for assignment.

Value

Vector of length equal to the number of cells containing cluster ID numbers of each cell.

Examples

set.seed(1)
x <- simulate_whx(nrow=50,ncol=100,rank=5)
s <- scNMFSet(count=x$x)
s <- vb_factorize(s,ranks=seq(2,8),nrun=5)
cid <- cluster_id(s, rank=5)
table(cid)

hjunwoo/ccfindR documentation built on Oct. 4, 2019, 10:31 a.m.