API for hjunwoo/ccfindR
Cancer Clone Finder

Global functions
[,scNMFSet,ANY,ANY,ANY-method Man page
[,scNMFSet-method Man page
basis Man page
basis,scNMFSet-method Man page
basis<- Man page
basis<-,scNMFSet-method Man page
branch.tree Source code
build_tree Man page Source code
calc_vmr Source code
cell_map Man page Source code
cluster_id Man page Source code
coeff Man page
coeff,scNMFSet-method Man page
coeff<- Man page
coeff<-,scNMFSet-method Man page
colData,scNMFSet-method Man page
colData<-,scNMFSet,ANY-method Man page
connectivity Source code
cophenet Source code
counts,scNMFSet-method Man page
counts<-,scNMFSet-method Man page
dispersion Source code
factorize Man page Source code
filter_cells Man page Source code
filter_genes Man page Source code
gene_map Man page Source code
gene_select Source code
has_mode Source code
hyper_update Source code
init Source code
likelihood Source code
measure Man page
measure,scNMFSet-method Man page
measure<- Man page
measure<-,scNMFSet-method Man page
meta_genes Man page Source code
newick Source code
nmf_updateR Source code
normalize_count Man page Source code
onAttach Source code
plot,scNMFSet,ANY-method Man page
plot_genes Man page Source code
plot_tree Man page Source code
ranks Man page
ranks,scNMFSet-method Man page
ranks<- Man page
ranks<-,scNMFSet-method Man page
read_10x Man page Source code
remove_zeros Man page Source code
rename_tips Man page Source code
rowData,scNMFSet-method Man page
rowData<-,scNMFSet-method Man page
rowVars Source code
scNMFSet Man page Source code
scNMFSet-class Man page
show,scNMFSet-method Man page
simulate_data Man page Source code
simulate_whx Man page Source code
update.tree Source code
vb_factorize Man page Source code
vb_init Source code
vbnmf_updateR Source code
visualize_clusters Man page Source code
write_10x Man page Source code
hjunwoo/ccfindR documentation built on April 29, 2018, 8:10 a.m.