load_scseq_datasets: Generate data.frame of integrated single cell RNA-Seq...

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Generate data.frame of integrated single cell RNA-Seq datasets

Description

Used together with load_bulk_datasets to create data.frame for selectizeInput choices.

Usage

load_scseq_datasets(data_dir)

Arguments

data_dir	Directory to folder with single-cell analysis folders.
with_type	if TRUE include column 'type' with values 'Single Cell'. Used for optgroupField in selectizeInput's. Default is FALSE

Value

data.frame with columns:

• dataset_name NA included for consistency with load_bulk_anals.

• dataset_dir Directory name in data_dir with single cell analysis.

• anal_name Name of single cell analysis. Same as dataset_dir.

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.