remove_dataset_files: Delete stale dataset files after changing sample groups or...

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Delete stale dataset files after changing sample groups or running sva

Description

Delete stale dataset files after changing sample groups or running sva

Usage

remove_dataset_files(
  data_dir,
  patterns = c("^adjusted_\\d+svs.qs$", "^iqr_keep_\\d+svs.qs$", "^vsd.qs$",
    "^svobj.qs$", "^numsv.qs$", "^lm_fit_\\d+svs.qs$", "^mds_\\d+svs.qs$",
    "cmap_res_.+_\\d+svs.qs$", "go_.+_\\d+svs.qs$", "goana_.+_\\d+svs.qs$",
    "kegg_.+_\\d+svs.qs$", "kegga_.+_\\d+svs.qs$",
    "l1000_drugs_res_.+_\\d+svs.qs$", "l1000_genes_res_.+_\\d+svs.qs$",
    "diff_expr_symbol_.+_\\d+svs.qs$"),
  exclude = NULL
)

Arguments

data_dir	Path to folder with dataset files
patterns	patterns to remove. Default is all.

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.