Files in ichcha-m/cophescan
Adaptation of the Coloc Method for PheWAS

.github/workflows/pkgdown.yaml

DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/cophe_hyp_predict.R R/copheplots.R R/cophescan-package.R R/metrop_hier_priors.R R/multitrait.R R/multivarsusie.R R/singlevar.R R/testdata.R

R/zzz.R

README.md

_pkgdown.yml

cophescan.Rproj

data/cophe_multi_trait_data.rda

docs/404.html

docs/LICENSE-text.html

docs/apple-touch-icon-120x120.png

docs/apple-touch-icon-152x152.png

docs/apple-touch-icon-180x180.png

docs/apple-touch-icon-60x60.png

docs/apple-touch-icon-76x76.png

docs/apple-touch-icon.png

docs/articles/FP-regManhat-1.png

docs/articles/FP-unnamed-chunk-4-1.png

docs/articles/FixedPriors_03.html

docs/articles/HP-cophePlots-1.png

docs/articles/HP-mcmcDiagnostics-1.png

docs/articles/HP-unnamed-chunk-8-1.png

docs/articles/HP-unnamed-chunk-8-2.png

docs/articles/HP-unnamed-chunk-8-3.png

docs/articles/HP-unnamed-chunk-9-1.png

docs/articles/HP-unnamed-chunk-9-2.png

docs/articles/HP-unnamed-chunk-9-3.png

docs/articles/HierarchicalPriors_04.html

docs/articles/InputData_02.html

docs/articles/IntroductionCoPheScan_01.html

docs/articles/figure/FP-unnamed-chunk-3-1.png

docs/articles/figure/HP-unnamed-chunk-4-1.png

docs/articles/figure/HP-unnamed-chunk-4-2.png

docs/articles/figure/HP-unnamed-chunk-4-3.png

docs/articles/figure/HP-unnamed-chunk-5-1.png

docs/articles/figure/HP-unnamed-chunk-5-2.png

docs/articles/figure/HP-unnamed-chunk-6-1.png

docs/articles/figure/HP-unnamed-chunk-6-2.png

docs/articles/figure/HP-unnamed-chunk-6-3.png

docs/articles/figure/Intro-unnamed-chunk-3-1.png

docs/articles/figure/Intro-unnamed-chunk-5-1.png

docs/articles/figure/Intro-unnamed-chunk-5-2.png

docs/articles/figure/Intro-unnamed-chunk-5-3.png

docs/articles/figure/Intro-unnamed-chunk-6-1.png

docs/articles/figure/Intro-unnamed-chunk-6-2.png

docs/articles/figure/Intro-unnamed-chunk-7-1.png

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/favicon-16x16.png

docs/favicon-32x32.png

docs/favicon.ico

docs/index.html

docs/link.svg

docs/logo.png

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Hc.cutoff.fdr.html

docs/reference/Rplot001.png

docs/reference/adjust_priors.html

docs/reference/average_piks.html

docs/reference/average_piks_list.html

docs/reference/average_posterior_prob.html

docs/reference/average_posterior_prob_list.html

docs/reference/combine.bf.html

docs/reference/combine.bf.kc.hier.html

docs/reference/cophe.bf_bf.html

docs/reference/cophe.hyp.predict.html

docs/reference/cophe.impute.html

docs/reference/cophe.multitrait.html

docs/reference/cophe.prepare.dat.single.html

docs/reference/cophe.prepare.dat.susie.html

docs/reference/cophe.single.html

docs/reference/cophe.single.lbf.html

docs/reference/cophe.susie.html

docs/reference/cophe.susie.lbf.html

docs/reference/cophe_heatmap.html

docs/reference/cophe_multi_trait_data.html

docs/reference/cophe_plot.html

docs/reference/cophescan-package.html

docs/reference/dot-cophe.impute.html

docs/reference/figures/logo.png

docs/reference/get_beta.html

docs/reference/get_posterior_prob.html

docs/reference/hypothesis.priors.html

docs/reference/index.html

docs/reference/logd_alpha.html

docs/reference/logd_beta.html

docs/reference/logd_gamma.html

docs/reference/loglik.html

docs/reference/logpost.html

docs/reference/logpriors.html

docs/reference/logsum.html

docs/reference/logsumexp.html

docs/reference/metrop_run.html

docs/reference/multitrait.simplify.html

docs/reference/pars2pik.html

docs/reference/pars_init.html

docs/reference/per.snp.priors.html

docs/reference/piks.html

docs/reference/plot_cophe_ternary.html

docs/reference/plot_trait_manhat.html

docs/reference/posterior_prob.html

docs/reference/prepare_plot_data.html

docs/reference/propose.html

docs/reference/run_metrop_priors.html

docs/reference/sample_alpha.html

docs/reference/sample_beta.html

docs/reference/sample_gamma.html

docs/reference/summary.cophe.html

docs/reference/target.html

docs/sitemap.xml

inst/CITATION

inst/pkgdown.yml

man/Hc.cutoff.fdr.Rd man/adjust_priors.Rd man/average_piks.Rd man/average_piks_list.Rd man/average_posterior_prob.Rd man/average_posterior_prob_list.Rd man/combine.bf.Rd man/cophe.bf_bf.Rd man/cophe.hyp.predict.Rd man/cophe.multitrait.Rd man/cophe.prepare.dat.single.Rd man/cophe.prepare.dat.susie.Rd man/cophe.single.Rd man/cophe.single.lbf.Rd man/cophe.susie.Rd man/cophe.susie.lbf.Rd man/cophe_heatmap.Rd man/cophe_multi_trait_data.Rd man/cophe_plot.Rd man/cophescan-package.Rd

man/figures/logo.png

man/get_beta.Rd man/get_posterior_prob.Rd man/hypothesis.priors.Rd man/logd_alpha.Rd man/logd_beta.Rd man/logd_gamma.Rd man/loglik.Rd man/logpost.Rd man/logpriors.Rd man/logsum.Rd man/logsumexp.Rd man/metrop_run.Rd man/multitrait.simplify.Rd man/pars2pik.Rd man/pars_init.Rd man/per.snp.priors.Rd man/piks.Rd man/plot_trait_manhat.Rd man/posterior_prob.Rd man/prepare_plot_data.Rd man/propose.Rd man/run_metrop_priors.Rd man/sample_alpha.Rd man/sample_beta.Rd man/sample_gamma.Rd man/summary.cophe.Rd man/target.Rd

pkgdown/favicon/apple-touch-icon-120x120.png

pkgdown/favicon/apple-touch-icon-152x152.png

pkgdown/favicon/apple-touch-icon-180x180.png

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/hier_priors.cpp

tests/testthat.R tests/testthat/test-hier.R tests/testthat/test-likelihood_calculations.R

vignettes/.gitignore

vignettes/FP-regManhat-1.png

vignettes/FixedPriors_03.Rmd

vignettes/HP-cophePlots-1.png

vignettes/HP-cophePlots-2.png

vignettes/HP-cophePlots-3.png

vignettes/HP-mcmcDiagnostics-1.png

vignettes/HP-unnamed-chunk-8-1.png

vignettes/HP-unnamed-chunk-8-2.png

vignettes/HP-unnamed-chunk-8-3.png

vignettes/HP-unnamed-chunk-9-1.png

vignettes/HP-unnamed-chunk-9-2.png

vignettes/HP-unnamed-chunk-9-3.png

vignettes/HierarchicalPriors_04.Rmd vignettes/InputData_02.Rmd vignettes/IntroductionCoPheScan_01.Rmd

ichcha-m/cophescan documentation built on June 16, 2024, 1:39 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

ichcha-m/cophescan
Adaptation of the Coloc Method for PheWAS

Files in ichcha-m/cophescan
Adaptation of the Coloc Method for PheWAS

R Package Documentation

Browse R Packages

We want your feedback!

ichcha-m/cophescan Adaptation of the Coloc Method for PheWAS

Files in ichcha-m/cophescan Adaptation of the Coloc Method for PheWAS

R Package Documentation

Browse R Packages

We want your feedback!

ichcha-m/cophescan
Adaptation of the Coloc Method for PheWAS

Files in ichcha-m/cophescan
Adaptation of the Coloc Method for PheWAS