API for ilia-kats/RiboSeqTools
Tools for analysis of selective ribosome profiling (SeRP) data
| Global functions | |
|---|---|
| %>% | Man page |
| `%:%` | Source code |
| `[.serp_data` | Source code |
| `[.serp_features` | Source code |
| align_stop | Source code |
| annotate_profile | Source code |
| binding_scores | Man page Source code |
| binding_scores_per_position | Source code |
| binom_ci | Man page Source code |
| binom_ci_profile | Man page Source code |
| c.serp_data | Source code |
| c.serp_features | Source code |
| calc_total_counts | Source code |
| check_background_fit_class | Source code |
| check_serp_class | Source code |
| check_serp_features_class | Source code |
| combine_breaks | Source code |
| combine_defaults | Source code |
| combine_limits | Source code |
| convolve_selection | Source code |
| defaults | Man page |
| do_boot | Source code |
| downsample | Man page Source code |
| excluded | Source code |
| excluded.serp_data | Man page Source code |
| experiments | Man page Source code |
| features | Man page Source code |
| fit_background_model | Man page |
| get_background_model | Man page Source code |
| get_binding_positions | Man page |
| get_binding_positions_by_threshold | Man page |
| get_binding_pvalues | Man page Source code |
| get_data | Source code |
| get_data.serp_data | Man page Source code |
| get_data.serp_features | Man page Source code |
| get_default_param | Source code |
| get_defaults | Source code |
| get_defaults.serp_data | Man page Source code |
| get_defaults.serp_features | Man page Source code |
| get_elbow_threshold | Man page Source code |
| get_gene_ref_idx | Source code |
| get_genecounts | Man page Source code |
| get_hdf5_genes | Source code |
| get_reference | Source code |
| get_reference.serp_data | Man page Source code |
| get_reference.serp_features | Man page Source code |
| get_total_counts | Source code |
| get_total_counts.serp_data | Man page Source code |
| import_csv | Source code |
| import_hdf5 | Source code |
| is_downsampled | Man page Source code |
| is_normalized | Source code |
| is_normalized.serp_data | Man page Source code |
| load_experiment | Source code |
| load_serp | Man page Source code |
| make_aligned_mats | Man page Source code |
| make_average_profilefun | Man page Source code |
| make_average_profilefun.serp_data | Man page Source code |
| make_average_profilefun.serp_features | Man page Source code |
| make_average_profilefun_impl | Source code |
| make_enrichment_profilefun | Man page Source code |
| make_expression_normalizefun | Man page Source code |
| make_function | Source code |
| make_label_fun | Man page Source code |
| make_ref_from_hdf5 | Source code |
| map_df_genenames | Source code |
| map_genenames | Source code |
| mat_to_df | Source code |
| metagene_profile | Source code |
| metagene_profiles | Man page Source code |
| metagene_profiles.serp_data | Man page Source code |
| metagene_profiles.serp_features | Man page Source code |
| normalize | Source code |
| normalize.serp_data | Man page Source code |
| plot.serp_data | Man page Source code |
| plot_background_model | Man page |
| plot_binding_positions | Man page |
| plot_metagene_profiles | Man page Source code |
| plot_treemap | Man page Source code |
| pois_ci | Man page Source code |
| pois_ci_profile | Man page Source code |
| print.serp_data | Source code |
| print.serp_features | Source code |
| print_list_name | Source code |
| print_var_if_exists | Source code |
| prob2odds | Source code |
| require_h5 | Source code |
| samples | Man page Source code |
| serp_data_accessors | Man page |
| serp_feature_accessors | Man page |
| serp_features | Man page Source code |
| set_background_model | Source code |
| set_binding_pvalues | Source code |
| set_data | Source code |
| set_defaults | Man page Source code |
| set_defaults.serp_data | Man page Source code |
| set_defaults.serp_features | Man page Source code |
| set_downsampled | Source code |
| set_excluded | Source code |
| set_normalized | Source code |
| set_reference | Source code |
| set_reference.serp_data | Source code |
| set_total_counts | Source code |
| test_binding | Man page |
| test_hdf5 | Source code |
