serp_feature_accessors: Accessors for 'serp_features' objects

In ilia-kats/RiboSeqTools: Tools for analysis of selective ribosome profiling (SeRP) data

Description

Accessors for serp_features objects

Usage

## S3 method for class 'serp_features'
get_data(data)

features(data)

## S3 method for class 'serp_features'
get_reference(data)

## S3 method for class 'serp_features'
get_defaults(data)

Arguments

data	A serp_features object.

Value

get_data

Nested named list, with first level representing the feature type and second level the binning. Data tables are matrices with each row corresponding to an ORF.

features

Character vector containing names of features in the data set.

get_reference

Reference data frame. Guaranteed to contain at least the following columns:

gene

Gene/ORF name. Must match the names given in the read count tables.

length

ORF length in nucleotides.

cds_length

ORF length in codons.

get_defaults

Named list of default parameters for this feature set.

ilia-kats/RiboSeqTools documentation built on Oct. 5, 2020, 7:41 p.m.