get_genecounts: Calculate total read counts per gene
In ilia-kats/RiboSeqTools: Tools for analysis of selective ribosome profiling (SeRP) data
Description
Usage
Arguments
Value
Description
Calculate total read counts per gene
Usage
1
get_genecounts(data, stats = FALSE)
Arguments
data
A serp_data object.
stats
Whether to return additional statistics per gene. Currently calculates the minimum and maximum
counts per gene. Note that setting this to TRUE heavily impacts performance.
Value
A tibble with columns exp, rep, sample, counts,
RPM, and RPKM. If genename_column is not "gene",
the tibble will in additon contain genename_column. If stats
is TRUE, contains additional counts and RPM columns prefixed with the
name of the summary statistic.
ilia-kats/RiboSeqTools documentation built on Oct. 5, 2020, 7:41 p.m.
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Description Usage Arguments Value
Description
Calculate total read counts per gene
Usage
1 | get_genecounts(data, stats = FALSE)
|
Arguments
data |
A |
stats |
Whether to return additional statistics per gene. Currently calculates the minimum and maximum
counts per gene. Note that setting this to |
Value
A tibble with columns exp, rep, sample, counts,
RPM, and RPKM. If genename_column is not "gene",
the tibble will in additon contain genename_column. If stats
is TRUE, contains additional counts and RPM columns prefixed with the
name of the summary statistic.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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