plot_treemap: Treemap plot of read counts per gene with an additional...

In ilia-kats/RiboSeqTools: Tools for analysis of selective ribosome profiling (SeRP) data

Description

This function tries really hard to make sure that the ordering of class groups in the plot corresponds to the ordering of the factor levels. The treemap is plotted using treemap.

Usage

plot_treemap(data, exp, rep, sample, geneclass, title = "", palette = "Set2")

Arguments

data	A serp_data object.
exp	Experiment name.
rep	Replicate name. If missing or NULL, read counts will be averaged over all replicates.
sample	Sample type.
geneclass	Data frame with columns gene and class. class must be an ordered factor.
title	Plot title.
palette	RColorBrewer palette to color-code the class variable

Value

An invisible list from treemap

See Also

treemap

ilia-kats/RiboSeqTools documentation built on Oct. 5, 2020, 7:41 p.m.