make_enrichment_profilefun: Generate the default function for metagene enrichment...

In ilia-kats/RiboSeqTools: Tools for analysis of selective ribosome profiling (SeRP) data

Description

Position-wise meta-enrichment is calculated asE_i = sum(sample[,i]) / sum(sample[,i]) where i is the position and g the gene.

Usage

make_enrichment_profilefun(data, sample1, sample2)

Arguments

data	A serp_data object
sample1	Name of the first sample (the numerator). If missing, the default sample1 of the data set will be used.
sample2	Name of the second sample (the denominator). If missing, the default sample2 of the data set will be used.

Value

A function that can be passed as profilefun to metagene_profiles

See Also

defaults, metagene_profiles, make_average_profilefun, make_expression_normalizefun

ilia-kats/RiboSeqTools documentation built on Oct. 5, 2020, 7:41 p.m.