serp_features: Create a 'serp_features' object

In ilia-kats/RiboSeqTools: Tools for analysis of selective ribosome profiling (SeRP) data

Description

This class holds position-wise features that are independent of experiment and replicate

Usage

serp_features(..., ref, bin = c("bynuc", "byaa"), defaults = list())

Arguments

...	Name-value pairs of matrices. The name of each argument denotes the feature type, the value is a matrix with each row corresponding to a gene/ORF.
ref	ref Reference data frame containing at least the following columns: gene Gene/ORF name. Must match the names given in the read count tables. length ORF length in nucleotides.
bin	Whether the features are per codon (byaa) or nucleotide (bynuc).
defaults	Default parameters for the feature set.

Value

An object of class serp_features

See Also

serp_feature_accessors, defaults

ilia-kats/RiboSeqTools documentation built on Oct. 5, 2020, 7:41 p.m.