make_aligned_mats: Align data matrices

In ilia-kats/RiboSeqTools: Tools for analysis of selective ribosome profiling (SeRP) data

Description

Centers each gene at a given position within the gene.

Usage

make_aligned_mats(
  data,
  align,
  lengths,
  pwidth,
  filter = NULL,
  binwidth = 1,
  binmethod = c("sum", "mean"),
  bpparam = BiocParallel::bpparam()
)

Arguments

data	Names list of data matrices.
align	Named vector of positions.
lengths	Named vector of gene/ORF lengths. Names must correspond to names of align.
pwidth	Width of the final matrices.
filter	Genes to include. Defaults to all genes.
binwidth	Bin width, if binning is desired.
binmethod	Binning method. sum: Read counts within each bin are summed up; mean: Read counts are averaged.

Value

Named list of matrices. Matrices are of width 2\cdot \textrm{pwidth} + 1, with align in column \textrm{pwidth} + 1.

ilia-kats/RiboSeqTools documentation built on Oct. 5, 2020, 7:41 p.m.