j-a-thia/genomalicious
A smorgasbord of R functions for population genomic analyses

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Search the j-a-thia/genomalicious package
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Functions
146
Source code
99
Man pages
75
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j-a-thia/genomalicious: A smorgasbord of R functions for population genomic analyses
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API

API for j-a-thia/genomalicious
A smorgasbord of R functions for population genomic analyses

Global functions
DT2Mat_freqs Man page Source code
DT2Mat_genos Man page Source code
DT2RADdata Man page Source code
DT2fasta Man page Source code
FUN_make_diploid_offspring Source code
adegenet_DT2genX Man page Source code
align_many_genes_aa Man page Source code
align_many_genes_dna Man page Source code
align_plot_aa Man page Source code
align_plot_dna Man page Source code
allele_counts Man page Source code
allele_freq_corr_windows Man page Source code
allele_freqs_DT Man page Source code
allele_uniq_DT Man page Source code
amino_acid_names Man page Source code
annotDT2exonList Man page Source code
assembly_correct_gaps Man page Source code
bayescan_inputs_pools Man page Source code
bed2featuretab Man page Source code
circle_cutter Man page Source code
circularity_test Man page Source code
codonDT2genome Man page Source code
da2DT Man page Source code
dadi_inputs Man page Source code
dapc_fit Man page Source code
dapc_infer Man page Source code
dapc_plot Man page Source code
data_FreqsMat Man page
data_Genos Man page
data_PoolFreqs Man page
data_PoolInfo Man page
dna2codonDT Man page Source code
family_sim_compare Man page Source code
family_sim_genos Man page Source code
family_sim_qtl Man page Source code
fasta2DT Man page Source code
filter_depth Man page Source code
filter_maf Man page Source code
filter_missing_loci Man page Source code
filter_missing_units Man page Source code
filter_space_loci Man page Source code
filter_supporting_reads Man page Source code
filter_unlink Man page Source code
fstat_calc Man page Source code
fstat_varcomps Man page
gene_map_plot Man page Source code
genomalicious Man page
genomalicious-package Man page
genos2freqs Man page Source code
genos2indAlleles Man page Source code
genoscore_converter Man page Source code
het_calc Man page Source code
kmeans_join_DT Man page Source code
locus_overlap Man page Source code
miss_plot_heatmap Man page Source code
miss_plot_hist Man page Source code
mitoGbk2DT Man page Source code
mitogenome_seq_repos Man page Source code
mrbayes_input Man page Source code
normalise_patterson Man page Source code
outflank_input_freqs Man page Source code
outflank_mod_fst_correct Man page Source code
outflank_mod_fst_nocorrect Man page Source code
pairwiseMat2DT Man page Source code
pca2DT Man page Source code
pca_genos Man page Source code
pca_plot Man page Source code
pcoa_freqs Man page Source code
pcoa_plot Man page Source code
polyrad_DT2RADdata Man page Source code
poolfstat_DT2Fst Man page Source code
poolfstat_DT2pooldata Man page Source code
poolne_estim_boot_pi Man page Source code
poolne_estim_input Man page Source code
poolne_estim_output Man page Source code
replace_miss_genos Man page Source code
vcf2DT Man page Source code
j-a-thia/genomalicious documentation built on Oct. 19, 2024, 7:51 p.m.

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