jasenfinch/metabolyseR
Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data

Package index
Search the jasenfinch/metabolyseR package
Vignettes
Functions
311
Source code
82
Man pages
53
Home
/
GitHub
/
jasenfinch/metabolyseR: Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data
/
API

API for jasenfinch/metabolyseR
Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data

Global functions
%>% Man page
Analysis-class Man page
AnalysisData-class Man page
AnalysisParameters-class Man page
QCMethods Source code
QCimpute Man page
QCimpute,AnalysisData-method Man page
QCoccupancy Man page
QCoccupancy,AnalysisData-method Man page
QCremove Man page
QCremove,AnalysisData-method Man page
QCrsdFilter Man page
QCrsdFilter,AnalysisData-method Man page
RandomForest-class Man page
Univariate-class Man page
aggregate Source code
aggregateMean Man page
aggregateMean,AnalysisData-method Man page
aggregateMedian Man page
aggregateMedian,AnalysisData-method Man page
aggregateMethods Source code
aggregateSum Man page
aggregateSum,AnalysisData-method Man page
analysisData Man page Source code
analysisElements Man page Source code
analysisParameters Man page Source code
analysisResults Man page
analysisResults,Analysis-method Man page
anova Man page
anova,AnalysisData-method Man page
binaryComparisons Man page
binaryComparisons,AnalysisData-method Man page
bindRows Man page
bindRows,list-method Man page
changeParameter<- Man page
changeParameter<-,AnalysisParameters-method Man page
checkCorrelationParameters Source code
checkModellingParameters Source code
checkParameters Source code
checkPreTreatmentParameters Source code
classificationImportance Source code
classificationImportancePvals Source code
classificationMetricPvals Source code
classificationMetrics Source code
classificationPredictions Source code
classificationPtail Source code
clsAdd Man page
clsAdd,Analysis-method Man page
clsAdd,AnalysisData-method Man page
clsArrange Man page
clsArrange,Analysis-method Man page
clsArrange,AnalysisData-method Man page
clsAvailable Man page
clsAvailable,Analysis-method Man page
clsAvailable,AnalysisData-method Man page
clsExtract Man page
clsExtract,Analysis-method Man page
clsExtract,AnalysisData-method Man page
clsLen Source code
clsRemove Man page
clsRemove,Analysis-method Man page
clsRemove,AnalysisData-method Man page
clsRename Man page
clsRename,Analysis-method Man page
clsRename,AnalysisData-method Man page
clsReplace Man page
clsReplace,Analysis-method Man page
clsReplace,AnalysisData-method Man page
collatePermutations Source code
collatePermutationsClassification Source code
collatePermutationsRegression Source code
collateUnsupervised Source code
collateUnsupervisedModels Source code
correctionCenter Man page
correctionCenter,AnalysisData-method Man page
correctionMethods Source code
correlations Man page
correlations,Analysis-method Man page
correlations,AnalysisData-method Man page
correlationsParameters Man page
dat Man page
dat,Analysis-method Man page
dat,AnalysisData-method Man page
dat<- Man page
dat<-,Analysis-method Man page
dat<-,AnalysisData-method Man page
doCorrelations Source code
explanatoryFeatures Man page
explanatoryFeatures,Analysis-method Man page
explanatoryFeatures,RandomForest-method Man page
explanatoryFeatures,Univariate-method Man page
explanatoryFeatures,list-method Man page
explanatoryFeaturesClassification Source code
explanatoryFeaturesRegression Source code
exportParameters Man page
exportParameters,Analysis-method Man page
exportParameters,AnalysisParameters-method Man page
features Man page
features,Analysis-method Man page
features,AnalysisData-method Man page
getModellingMethods Source code
getPreTreatMethods Source code
heatmapClasses Source code
heatmapRegression Source code
importance Man page
importance,Analysis-method Man page
importance,RandomForest-method Man page
importance,Univariate-method Man page
importance,list-method Man page
importanceMetrics Man page
importanceMetrics,RandomForest-method Man page
importancePvals Source code
imputeAll Man page
imputeAll,AnalysisData-method Man page
imputeClass Man page
imputeClass,AnalysisData-method Man page
imputeMethods Source code
keepClasses Man page
keepClasses,AnalysisData-method Man page
keepFeatures Man page
keepFeatures,AnalysisData-method Man page
keepMethods Source code
keepSamples Man page
keepSamples,AnalysisData-method Man page
linearRegression Man page
linearRegression,AnalysisData-method Man page
mds Man page
mds,Analysis-method Man page
mds,RandomForest-method Man page
mds,list-method Man page
metabolyse Man page Source code
metricPvals Source code
metrics Man page
metrics,Analysis-method Man page
metrics,RandomForest-method Man page
metrics,list-method Man page
modelImportance Source code
modelPredictions Source code
modelProximities Source code
modellingMethods Man page
modellingParameters Man page
mtry Man page
mtry,AnalysisData-method Man page
nFeatures Man page
nFeatures,Analysis-method Man page
nFeatures,AnalysisData-method Man page
nSamples Man page
nSamples,Analysis-method Man page
nSamples,AnalysisData-method Man page
occupancy Man page
occupancy,AnalysisData-method Man page
occupancyMaximum Man page
occupancyMaximum,AnalysisData-method Man page
occupancyMethods Source code
occupancyMinimum Man page
occupancyMinimum,AnalysisData-method Man page
parameters Man page
parameters,Analysis-method Man page
parameters,AnalysisParameters-method Man page
parameters<- Man page
parameters<-,Analysis-method Man page
parameters<-,AnalysisParameters-method Man page
parseParameters Man page Source code
performRF Source code
performanceMetrics Source code
permutations Source code
permute Source code
plan Man page
plotBase Source code
plotColour Source code
plotEllipses Source code
plotExplanatoryHeatmap Man page
plotExplanatoryHeatmap,Analysis-method Man page
plotExplanatoryHeatmap,RandomForest-method Man page
plotExplanatoryHeatmap,Univariate-method Man page
plotExplanatoryHeatmap,list-method Man page
plotFeature Man page
plotFeature,Analysis-method Man page
plotFeature,AnalysisData-method Man page
plotImportance Man page
plotImportance,RandomForest-method Man page
plotImportance,Univariate-method Man page
plotImportance,list-method Man page
plotLDA Man page
plotLDA,Analysis-method Man page
plotLDA,AnalysisData-method Man page
plotLabel Source code
plotMDS Man page
plotMDS,RandomForest-method Man page
plotMDS,list-method Man page
plotMetrics Man page
plotMetrics,RandomForest-method Man page
plotMetrics,list-method Man page
plotOccupancy Man page
plotOccupancy,Analysis-method Man page
plotOccupancy,AnalysisData-method Man page
plotPCA Man page
plotPCA,Analysis-method Man page
plotPCA,AnalysisData-method Man page
plotROC Man page
plotROC,RandomForest-method Man page
plotROC,list-method Man page
plotRSD Man page
plotRSD,Analysis-method Man page
plotRSD,AnalysisData-method Man page
plotShape Source code
plotSupervisedRF Man page
plotSupervisedRF,Analysis-method Man page
plotSupervisedRF,AnalysisData-method Man page
plotTIC Man page
plotTIC,Analysis-method Man page
plotTIC,AnalysisData-method Man page
plotTheme Source code
plotUnsupervisedRF Man page
plotUnsupervisedRF,Analysis-method Man page
plotUnsupervisedRF,AnalysisData-method Man page
preTreated Man page
preTreated,Analysis-method Man page
preTreated<- Man page
preTreated<-,Analysis-method Man page
preTreatmentElements Man page
preTreatmentMethods Man page
preTreatmentParameters Man page
predict Man page
predict,RandomForest,AnalysisData-method Man page
predictions Man page
predictions,Analysis-method Man page
predictions,RandomForest-method Man page
predictions,list-method Man page
proximity Man page
proximity,Analysis-method Man page
proximity,RandomForest-method Man page
proximity,list-method Man page
randomForest Man page
randomForest,AnalysisData-method Man page
raw Man page
raw,Analysis-method Man page
raw<- Man page
raw<-,Analysis-method Man page
reAnalyse Man page
reAnalyse,Analysis-method Man page
reexports Man page
regressionImportance Source code
regressionImportancePvals Source code
regressionMetricPvals Source code
regressionMetrics Source code
regressionPredictions Source code
removeClasses Man page
removeClasses,AnalysisData-method Man page
removeFeatures Man page
removeFeatures,AnalysisData-method Man page
removeMethods Source code
removeSamples Man page
removeSamples,AnalysisData-method Man page
response Man page
response,RandomForest-method Man page
response,Univariate-method Man page
roc Man page
roc,Analysis-method Man page
roc,RandomForest-method Man page
roc,list-method Man page
rsd Man page
rsd,AnalysisData-method Man page
scatterPlot Source code
shapeValues Source code
sinfo Man page
sinfo,Analysis-method Man page
sinfo,AnalysisData-method Man page
sinfo<- Man page
sinfo<-,Analysis-method Man page
sinfo<-,AnalysisData-method Man page
split Man page
split,AnalysisData-method Man page
transformArcSine Man page
transformArcSine,AnalysisData-method Man page
transformAuto Man page
transformAuto,AnalysisData-method Man page
transformCenter Man page
transformCenter,AnalysisData-method Man page
transformLevel Man page
transformLevel,AnalysisData-method Man page
transformLn Man page
transformLn,AnalysisData-method Man page
transformLog10 Man page
transformLog10,AnalysisData-method Man page
transformMethods Source code
transformPareto Man page
transformPareto,AnalysisData-method Man page
transformPercent Man page
transformPercent,AnalysisData-method Man page
transformRange Man page
transformRange,AnalysisData-method Man page
transformSQRT Man page
transformSQRT,AnalysisData-method Man page
transformTICnorm Man page
transformTICnorm,AnalysisData-method Man page
transformVast Man page
transformVast,AnalysisData-method Man page
ttest Man page
ttest,AnalysisData-method Man page
tune Man page
tune,AnalysisData-method Man page
type Man page
type,RandomForest-method Man page
type,Univariate-method Man page
unsupervised Source code
jasenfinch/metabolyseR documentation built on Sept. 18, 2023, 1:25 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close