Files in jasenfinch/metabolyseR
Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/QC.R
R/aggregate.R
R/all-classes.R
R/analysis-accessors.R
R/analysisData.R
R/correction.R
R/correlations.R
R/impute.R
R/info.R
R/join.R
R/keep.R
R/mds.R
R/metabolyse.R
R/metabolyseR.R
R/modelling-accessors.R
R/modelling-plots.R
R/modelling.R
R/nlda.R
R/occupancy.R
R/parameters.R
R/plotExplanatoryHeatmap.R
R/plotFeature.R
R/plotLDA.R
R/plotOccupancy.R
R/plotPCA.R
R/plotRSD.R
R/plotSupervisedRF.R
R/plotTIC.R
R/plotUnsupervisedRF.R
R/plotting.R
R/pre-treatment.R
R/predict.R
R/randomForest-classification.R
R/randomForest-internals.R
R/randomForest-permute.R
R/randomForest-regression.R
R/randomForest-unsupervised.R
R/randomForest.R
R/reexports.R
R/remove.R
R/roc.R
R/rsd.R
R/show-method.R
R/split.R
R/transform.R
R/tune.R
R/univariate.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
inst/defaultParameters.yaml
inst/exampleParameters.yaml
man/Analysis-class.Rd
man/AnalysisData-class.Rd
man/AnalysisParameters-class.Rd
man/QC.Rd
man/RandomForest-class.Rd
man/Univariate-class.Rd
man/aggregate.Rd
man/analysis-accessors.Rd
man/analysisData.Rd
man/analysisElements.Rd
man/analysisParameters.Rd
man/anova.Rd
man/bind.Rd
man/changeParameter.Rd
man/cls.Rd
man/correction.Rd
man/correlations.Rd
man/correlationsParameters.Rd
man/figures/README-feature_plot-1.png
man/figures/README-pca-1.png
man/figures/README-rf_heatmap-1.png
man/figures/README-supervised_RF-1.png
man/impute.Rd
man/io-parameters.Rd
man/keep.Rd
man/linearRegression.Rd
man/mds.Rd
man/metabolyse.Rd
man/modelling-accessors.Rd
man/modelling-parameters.Rd
man/occupancy.Rd
man/occupancyFilter.Rd
man/parameters.Rd
man/plotExplanatoryHeatmap.Rd
man/plotFeature.Rd
man/plotImportance.Rd
man/plotLDA.Rd
man/plotMDS.Rd
man/plotMetrics.Rd
man/plotOccupancy.Rd
man/plotPCA.Rd
man/plotROC.Rd
man/plotRSD.Rd
man/plotSupervisedRF.Rd
man/plotTIC.Rd
man/plotUnsupervisedRF.Rd
man/pre-treatment-parameters.Rd
man/predict.Rd
man/randomForest.Rd
man/reexports.Rd
man/remove.Rd
man/roc.Rd
man/rsd.Rd
man/split.Rd
man/transform.Rd
man/ttest.Rd
man/tune.Rd
metabolyseR.Rproj
tests/testthat.R
tests/testthat/test-QCMethods.R
tests/testthat/test-aggregateMethods.R
tests/testthat/test-analysisData.R
tests/testthat/test-analysisParameters.R
tests/testthat/test-changeParameter.R
tests/testthat/test-correctionMethods.R
tests/testthat/test-correlations.R
tests/testthat/test-impute.R
tests/testthat/test-info.R
tests/testthat/test-keep.R
tests/testthat/test-mds.R
tests/testthat/test-metabolyse.R
tests/testthat/test-modelling-plots.R
tests/testthat/test-occupancyMethods.R
tests/testthat/test-parameters.R
tests/testthat/test-plotExplanatoryHeatmap.R
tests/testthat/test-plotFeature.R
tests/testthat/test-plotLDA.R
tests/testthat/test-plotOccupancy.R
tests/testthat/test-plotPCA.R
tests/testthat/test-plotRSD.R
tests/testthat/test-plotSupervisedRF.R
tests/testthat/test-plotTIC.R
tests/testthat/test-plotUnsupervisedRF.R
tests/testthat/test-predict.R
tests/testthat/test-randomForest.R
tests/testthat/test-reAnalyse.R
tests/testthat/test-removeMethods.R
tests/testthat/test-roc.R
tests/testthat/test-show.R
tests/testthat/test-split.R
tests/testthat/test-transformMethods.R
tests/testthat/test-tune.R
tests/testthat/test-univariate.R
vignettes/.gitignore
vignettes/metabolyseR.Rmd
vignettes/modelling.Rmd
vignettes/pre_treatment.Rmd
vignettes/quick_start.Rmd
