plotTIC: Plot sample total ion counts

In jasenfinch/metabolyseR: Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data

Plot sample total ion counts

Description

Plot total ion counts of sample data.

Usage

plotTIC(analysis, by = "injOrder", colour = "block", ...)

## S4 method for signature 'AnalysisData'
plotTIC(analysis, by = "injOrder", colour = "block")

## S4 method for signature 'Analysis'
plotTIC(
  analysis,
  by = "injOrder",
  colour = "block",
  type = c("pre-treated", "raw")
)

Arguments

analysis	S4 object of class AnalysisData or Analysis
by	information column to plot against
colour	information column to provide colour labels
...	arguments to pass to the appropriate method
type	raw or pre-treated sample data

Examples

library(metaboData)

d <- analysisData(abr1$neg,abr1$fact)

## Plot sample TIVs
plotTIC(d,by = 'injorder',colour = 'day')

plotTIC(d,by = 'day',colour = 'day')

jasenfinch/metabolyseR documentation built on Sept. 18, 2023, 1:25 a.m.