parameters: Get or set analysis parameters

In jasenfinch/metabolyseR: Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data

Get or set analysis parameters

Description

Get or set parameters for AnalysisParameters or Analysis class objects.

Usage

parameters(d, ...)

## S4 method for signature 'AnalysisParameters'
parameters(d, element)

## S4 method for signature 'Analysis'
parameters(d)

parameters(d, element) <- value

## S4 replacement method for signature 'AnalysisParameters'
parameters(d, element) <- value

## S4 replacement method for signature 'Analysis'
parameters(d) <- value

Arguments

d	S4 object of class AnalysisParameters or Analysis
...	arguments to pass to the appropriate method
element	analysis element for parameters to extract or assign. Should be one of those returned by analysisElements()
value	list containing parameter values

Examples

p <- analysisParameters('pre-treatment')

## extract pre-treatment parameters
parameters(p,'pre-treatment')

## set pre-treatment parameters
parameters(p,'pre-treatment') <- preTreatmentParameters(
  list(
    remove = 'classes',
    QC = c('RSDfilter','removeQC'),
    transform = 'TICnorm'
  )
)

print(p)

jasenfinch/metabolyseR documentation built on Sept. 18, 2023, 1:25 a.m.