fix_coordinates_with_hgvs_genomic: extract genomic coordinates for variants encoded as HGVS...
In jeremymcrae/publishedDeNovos: Published De Novos Dataset from Developmental Disorder Sequencing Studies
Description
Usage
Arguments
Value
Examples
Description
extract genomic coordinates for variants encoded as HGVS genomic
Usage
1
fix_coordinates_with_hgvs_genomic(variants, hgvs_column)
Arguments
variants
data frame of variants
hgvs_column
name of column containing HGVS coordinate
Value
a data frame with chrom, start_pos, end_pos and allele columns.
Examples
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fix_coordinates_with_hgvs_genomic(
data.frame(hgvs=c("chr7:g.155556643G>A")), "hgvs")
fix_coordinates_with_hgvs_genomic(data.frame(
hgvs=c("chr3:g.11060365_11060365del")), "hgvs")
fix_coordinates_with_hgvs_genomic(data.frame(
hgvs=c("chr13:g.50057690_50057691insA")), "hgvs")
jeremymcrae/publishedDeNovos documentation built on May 19, 2019, 5:08 a.m.
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Description Usage Arguments Value Examples
Description
extract genomic coordinates for variants encoded as HGVS genomic
Usage
1 | fix_coordinates_with_hgvs_genomic(variants, hgvs_column)
|
Arguments
variants |
data frame of variants |
hgvs_column |
name of column containing HGVS coordinate |
Value
a data frame with chrom, start_pos, end_pos and allele columns.
Examples
1 2 3 4 5 6 | fix_coordinates_with_hgvs_genomic(
data.frame(hgvs=c("chr7:g.155556643G>A")), "hgvs")
fix_coordinates_with_hgvs_genomic(data.frame(
hgvs=c("chr3:g.11060365_11060365del")), "hgvs")
fix_coordinates_with_hgvs_genomic(data.frame(
hgvs=c("chr13:g.50057690_50057691insA")), "hgvs")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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