map_coordinates: map coordiantes from one assembly to another

In jeremymcrae/publishedDeNovos: Published De Novos Dataset from Developmental Disorder Sequencing Studies

Description

map coordiantes from one assembly to another

Usage

map_coordinates(variant, inbuild = "grch38", outbuild = "grch37",
  build = "grch37", verbose = FALSE)

Arguments

variant	data frame or list for a variant, containing columns named "chrom", "start_pos", and "end_pos" for a single variant
inbuild	genome build to find consequences on
outbuild	genome build to find consequences on
build	build of REST server to use
verbose	flag indicating whether to print variants as they are checked

Value

a character string containing the HGNC symbol.

Examples

map_coordinates(data.frame(chrom=c("1"), start_pos=c("1000000"),
    end_pos=c("1000000")))
map_coordinates(list(chrom="1", start_pos="1000000",
    end_pos="1000000"))

jeremymcrae/publishedDeNovos documentation built on May 19, 2019, 5:08 a.m.