Description Usage Arguments Value Examples
find genomic sequence within a region
1 | get_sequence_in_region(variant, build = "grch37", verbose = FALSE)
|
variant |
data frame or list for a variant, containing columns named "chrom", "start_pos", and "end_pos" for a single variant |
build |
genome build to find consequences on |
verbose |
flag indicating whether to print variants as they are checked |
a character string containing the HGNC symbol.
1 2 3 4 | get_gene_id_for_variant(data.frame(chrom=c("1"), start_pos=c("1000000"),
end_pos=c("1000000")))
get_gene_id_for_variant(list(chrom="1", start_pos="1000000",
end_pos="1000000"))
|
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