Tools for statistical analysis of genomics data

bootstrap_cells | Bootstrap cell labels for computing confidence intervals |

bootstrap_cv_test | Bootstrapping to estimate confidence interval for individual... |

cell_phase_assign | Assign cell-phase using an ad hoc approach described in... |

compute_cv | Compute coefficient of variation |

demo_data | Import data and prepare objects for shiny app |

fisherCorrTest | Fisher's test for comparing Pearson's correlation... |

fit_lm | Differential expression analysis using likelihood ratio test... |

get_qval | Multiple hypothesis testings correction |

gls.series_multiple_designs | limma gls.series adapted for varying covariates across genes |

goHeatmapData | Convert Prepare data for visualizing GO terms in a heatmap |

GOtest | Convert ENSG IDs to ENTREZ IDs adapted from... |

Humanzee-package | Gilad lab's tools for comparative analysis of gene expression... |

interact2way | Interaction model for comparing inter-species divergence |

interact2way_full_buffer | Original version of interaction model for comparing... |

mixedModel2Fit_multiple_design | Fitting mixed models of one random effect |

normalize_cv | Adjust coefficients of variation to remove mean dependency |

permute_cells | Permute cell labels for computing empirical p-values |

permute_cv_test | Permute cell labels for computing empirical p-values |

permute_interact | Wapper function for running interaction model on null data... |

permute_interact_per_gene | Permutation-based test for per gene interaction models |

plot_density_overlay | Overlay density curves using base package |

plot_divergence_scatter | Scatter plot of per gene inter-species divergence estimates |

plotHeatmap | Plot a heatmap of GO terms |

PropTest | Two-proportion z-test |

run_igraphScatter | Run Scatter shiny app |

ruv_mixed_model | Remove unwanted variation using mixed model |

testDE | Inter-species divergence likelihood ratio test |

voomWeightsCustomized | Compute voom weights using customized log2 counts |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.