goHeatmapData: Convert Prepare data for visualizing GO terms in a heatmap

In jhsiao999/Humanzee: Tools for statistical analysis of genomics data

Description

Convert Prepare data for visualizing GO terms in a heatmap

Usage

goHeatmapData(golist)

Arguments

go_list

a list that contains summary statistics of the GO terms in GOstats package. This is used with the GOtest function.

Value

heatmap_allgos a matrix that contains GO terms, associated annotations, and the p-values of enrichment analysis.

Examples

golist <- list(go_riboGTrna = summary(go_riboGTrna$CC, pvalue = 1),
                go_rnaGTribo = summary(go_rnaGTribo$CC, pvalue = 1),
                go_riboGTpro = summary(go_riboGTpro$CC, pvalue = 1),
                go_proGTribo = summary(go_proGTribo$CC, pvalue = 1) )
heatmap_cc <- goHeatmapData (golist)

jhsiao999/Humanzee documentation built on May 19, 2019, 9:28 a.m.