cell_phase_assign: Assign cell-phase using an ad hoc approach described in...
In jhsiao999/Humanzee: Tools for statistical analysis of genomics data
Description
Usage
Arguments
Value
See Also
Examples
Description
This approach was develped for single-cell RNA sequencing data (scRNA-seq)
collected using Drop-seq protocol.
Usage
1
cell_phase_assign(cell_cycle_genes, expression_matrix)
Arguments
cell_cycle_gene
a list that is comprised of cell-cycle genes (Ensemble IDs)
expression
matrix gene-by-cell matrix. Currently, the method can be applied
to both count data and log-transformed counts.
Value
score_final_normed Phase-specific score matrix. Scores are standardized
to z-scores across cells and across phases.
See Also
Other single.cell: permute_cells,
plot_density_overlay
Examples
1
jhsiao999/Humanzee documentation built on May 19, 2019, 9:28 a.m.
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Description Usage Arguments Value See Also Examples
Description
This approach was develped for single-cell RNA sequencing data (scRNA-seq) collected using Drop-seq protocol.
Usage
1 | cell_phase_assign(cell_cycle_genes, expression_matrix)
|
Arguments
cell_cycle_gene |
a list that is comprised of cell-cycle genes (Ensemble IDs) |
expression |
matrix gene-by-cell matrix. Currently, the method can be applied to both count data and log-transformed counts. |
Value
score_final_normed Phase-specific score matrix. Scores are standardized to z-scores across cells and across phases.
See Also
Other single.cell: permute_cells,
plot_density_overlay
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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