permute_interact_per_gene: Permutation-based test for per gene interaction models
In jhsiao999/Humanzee: Tools for statistical analysis of genomics data

Description Usage Arguments Examples

Written for Sidneys' paper on inter-species comparsions of translation regulation. This function performs permutation of sample lables across species and/or across technology type (RNA, Ribo, Protein) to compute empirical p-values of interaction models.

1 2	permute_interact_per_gene(eset_full, datatypes, permute_phenotype, n_permute, ncores = 4)

`eset_full`	Expression set.
`datatypes`	data types included in the analysis
`n_permute`	number of permutation
`ncores`	Number of cores requested.
`permute_phenotypes`	phenotypes that we would like to shuffle labels between/within