plot_divergence_scatter: Scatter plot of per gene inter-species divergence estimates

In jhsiao999/Humanzee: Tools for statistical analysis of genomics data

Description

This function is a wrapper for a scatter plot displaying per gene inter-species divergence estimates with each gene marked for two divergence categories by color and shape

Usage

plot_divergence_scatter(xy, ind_points1 = NULL, ind_points2 = NULL, xlab,
  ylab, col_bkpoints = "black", cex_bkpoints = 0.4, lwd_bkpoints = 0.5,
  pch_bkpoints = 1, col_points1 = brocolors("crayons")["Red Orange"],
  col_points2 = brocolors("crayons")["Red Orange"], col_diag = "grey",
  cex_points1 = 0.13, cex_points2 = 0.13, pch_points1 = 20,
  pch_points2 = 20, col_hline = brocolors("crayons")["Pine Green"],
  col_vline = brocolors("crayons")["Pine Green"], lwd_hline = 0.5,
  lwd_vline = 0.5, cex.axis = 0.3, cex.lab = 0.3, xlim = c(-6, 10),
  ylim = c(-6, 10))

Arguments

xy	A two-column matrix including x-axis and y-axis values in the first and second columns, respectively.

Examples

plot_divergence_scatter()

jhsiao999/Humanzee documentation built on May 19, 2019, 9:28 a.m.