interact2way: Interaction model for comparing inter-species divergence
In jhsiao999/Humanzee: Tools for statistical analysis of genomics data
Description
Usage
Arguments
Examples
Description
This function is a wrapper for an interaction model testing
inter-species differences in divergence between molecular
phenotypes under a nested linear model framework. We use
likelihood ratio statistic to determine statistical significance
of the difference between inter-species divergence.
Usage
1
interact2way(eSet, coef = FALSE)
Arguments
eSet
data set contains the two molecular phenotypes
Examples
1
2
3
interact2way()
eSet <- eSetRRP.RP.Q.log2[ ,eSetRRP.RP.Q.log2$seqData!="protein" &
eSetRRP.RP.Q.log2$species!="rhesus"]
jhsiao999/Humanzee documentation built on May 19, 2019, 9:28 a.m.
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Description Usage Arguments Examples
Description
This function is a wrapper for an interaction model testing inter-species differences in divergence between molecular phenotypes under a nested linear model framework. We use likelihood ratio statistic to determine statistical significance of the difference between inter-species divergence.
Usage
1 | interact2way(eSet, coef = FALSE)
|
Arguments
eSet |
data set contains the two molecular phenotypes |
Examples
1 2 3 | interact2way()
eSet <- eSetRRP.RP.Q.log2[ ,eSetRRP.RP.Q.log2$seqData!="protein" &
eSetRRP.RP.Q.log2$species!="rhesus"]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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