API for jiabowang/GAPIT3
GAPIT (Genomic Association and Prediction Integrated Tool)
| Global functions | |
|---|---|
| %>% | Man page |
| Blink | Man page |
| Densitplot | Source code |
| FarmCPU | Man page |
| GAPIT | Man page |
| GAPIT.AUC | Source code |
| GAPIT.Circle.Manhattan.Plot | Source code |
| GAPIT.Compression.Visualization | Man page |
| GAPIT.ID | Man page |
| GAPIT.Main | Man page |
| GAPIT.SUPER.GS | Man page |
| Genetic Map data | Man page |
| HAPMAP format data | Man page |
| Numeric format data | Man page |
| Phenotypic data | Man page |
| `Blink.BICselection` | Source code |
| `Blink.LDRemoveBlock` | Source code |
| `Blink.LDRemove` | Source code |
| `Blink.LM` | Source code |
| `Blink.Pred` | Source code |
| `Blink.SUB` | Source code |
| `Blink.cor` | Source code |
| `Blink.ptor` | Source code |
| `Blink.rtop` | Source code |
| `Blink` | Source code |
| `FarmCPU.0000` | Source code |
| `FarmCPU.BIN` | Source code |
| `FarmCPU.Burger` | Source code |
| `FarmCPU.GLM` | Source code |
| `FarmCPU.Inv` | Source code |
| `FarmCPU.LM.Parallel` | Source code |
| `FarmCPU.P.Threshold` | Source code |
| `FarmCPU.Pred` | Source code |
| `FarmCPU.Prior` | Source code |
| `FarmCPU.Remove` | Source code |
| `FarmCPU.SUB` | Source code |
| `FarmCPU` | Source code |
| `GAPIT.0000` | Source code |
| `GAPIT.BIPH` | Source code |
| `GAPIT.Block` | Source code |
| `GAPIT.Bread` | Source code |
| `GAPIT.Burger` | Source code |
| `GAPIT.Bus` | Source code |
| `GAPIT.CVMergePC` | Source code |
| `GAPIT.Compress` | Source code |
| `GAPIT.Compression.Visualization` | Source code |
| `GAPIT.Cor.matrix` | Source code |
| `GAPIT.Create.Indicator` | Source code |
| `GAPIT.DP` | Source code |
| `GAPIT.EMMAxP3D` | Source code |
| `GAPIT.FDR.TypeI` | Source code |
| `GAPIT.FilterByTaxa` | Source code |
| `GAPIT.Fragment` | Source code |
| `GAPIT.GS.Visualization` | Source code |
| `GAPIT.GS` | Source code |
| `GAPIT.Genotype.View` | Source code |
| `GAPIT.Genotype` | Source code |
| `GAPIT.HMP.Amplification` | Source code |
| `GAPIT.HMP2Num` | Source code |
| `GAPIT.HapMap` | Source code |
| `GAPIT.IC` | Source code |
| `GAPIT.ID` | Source code |
| `GAPIT.Imputation` | Source code |
| `GAPIT.Interactive.GS` | Source code |
| `GAPIT.Interactive.Manhattan` | Source code |
| `GAPIT.Judge` | Source code |
| `GAPIT.LD.decay` | Source code |
| `GAPIT.Licols` | Source code |
| `GAPIT.Liner` | Source code |
| `GAPIT.Log` | Source code |
| `GAPIT.MAF` | Source code |
| `GAPIT.MAS` | Source code |
| `GAPIT.Main` | Source code |
| `GAPIT.Manhattan` | Source code |
| `GAPIT.Memory.Object` | Source code |
| `GAPIT.Memory` | Source code |
| `GAPIT.Multiple.Manhattan` | Source code |
| `GAPIT.Multiple.QQ` | Source code |
| `GAPIT.Multiple_Synthesis` | Source code |
| `GAPIT.Numericalization` | Source code |
| `GAPIT.PCA2Power` | Source code |
| `GAPIT.PCA` | Source code |
| `GAPIT.PagainstP` | Source code |
| `GAPIT.Perform.BH.FDR.Multiple.Correction.Procedure` | Source code |
| `GAPIT.Phenotype.PCA.View` | Source code |
| `GAPIT.Phenotype.Simulation` | Source code |
| `GAPIT.Phenotype.View` | Source code |
| `GAPIT.Phenotype.afterGWAS` | Source code |
| `GAPIT.Power.compare.plink` | Source code |
| `GAPIT.Power.compare` | Source code |
| `GAPIT.Power` | Source code |
| `GAPIT.Pruning` | Source code |
| `GAPIT.QC2` | Source code |
| `GAPIT.QC` | Source code |
| `GAPIT.QQ` | Source code |
| `GAPIT.ROC` | Source code |
| `GAPIT.RandomModel` | Source code |
| `GAPIT.Remove.outliers` | Source code |
| `GAPIT.RemoveDuplicate` | Source code |
| `GAPIT.Report` | Source code |
| `GAPIT.SS` | Source code |
| `GAPIT.SUPER.FastMLM` | Source code |
| `GAPIT.SUPER.GS` | Source code |
| `GAPIT.Specify` | Source code |
| `GAPIT.Table` | Source code |
| `GAPIT.Timmer` | Source code |
| `GAPIT.Validation` | Source code |
| `GAPIT.ZmatrixCompress` | Source code |
| `GAPIT.ZmatrixFormation` | Source code |
| `GAPIT.cross_validation.compare` | Source code |
| `GAPIT.emma.REMLE` | Source code |
| `GAPIT.kinship.VanRaden` | Source code |
| `GAPIT.kinship.Zhang` | Source code |
| `GAPIT.kinship.loiselle` | Source code |
| `GAPIT.kinship.separation` | Source code |
| `GAPIT.replaceNaN` | Source code |
| `GAPIT` | Source code |
| circle.plot | Source code |
| emma.ML.LRT | Source code |
| emma.MLE | Source code |
| emma.REML.t | Source code |
| emma.REMLE | Source code |
| emma.delta.ML.LL.w.Z | Source code |
| emma.delta.ML.LL.wo.Z | Source code |
| emma.delta.ML.dLL.w.Z | Source code |
| emma.delta.ML.dLL.wo.Z | Source code |
| emma.delta.REML.LL.w.Z | Source code |
| emma.delta.REML.LL.wo.Z | Source code |
| emma.delta.REML.dLL.w.Z | Source code |
| emma.delta.REML.dLL.wo.Z | Source code |
| emma.eigen.L | Source code |
| emma.eigen.L.w.Z | Source code |
| emma.eigen.L.wo.Z | Source code |
| emma.eigen.R | Source code |
| emma.eigen.R.w.Z | Source code |
| emma.eigen.R.wo.Z | Source code |
| emma.kinship | Source code |
| mlmm | Source code |
| mlmm_cof | Source code |
