Files in jmw86069/jamses
Jam SummarizedExperiment Stats

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/jam_abbrevations.R R/jam_choose_annotation_colnames.R R/jam_collapse_by_column.R R/jam_collapse_se.R R/jam_contrast2comp.R R/jam_contrast2comp_dev.R R/jam_contrast_colors.R R/jam_contrastnames2design.R R/jam_contrasts_to_venn_setlists.R R/jam_draw_contrasts.R R/jam_filter_contrast_names.R R/jam_groupstosedesign.R R/jam_hmgroupcolumnlabels.R R/jam_plot_sedesign.R R/jam_prep_sestats_hitim.R R/jam_save_sestats.R R/jam_se_detectrows.R R/jam_se_rbind.R R/jam_secontrasts.R R/jam_sedesign.R R/jam_sedesign_to_factors.R R/jam_senormalize.R R/jam_sestats.R R/jam_sestats_dfs.R R/jam_sestats_hitarray_to_list.R R/jam_sestats_hm.R R/jam_shrink_df.R R/jam_shrink_df_alt.R R/jam_shrink_matrix.R R/jam_statutil.R R/se_to_rowcoldata.R README.Rmd README.md TODO.md

_pkgdown.yml

docs/404.html

docs/LICENSE-text.html

docs/TODO.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

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docs/pkgdown.yml

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docs/reference/check_sedesign.html

docs/reference/choose_annotation_colnames.html

docs/reference/contrast2comp.html

docs/reference/contrast2comp_dev.html

docs/reference/contrast_colors_by_group.html

docs/reference/contrast_names_to_sedesign.html

docs/reference/detect_heatmap_components.html

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docs/reference/filter_contrast_names.html

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docs/reference/handle_na_values.html

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docs/reference/process_sestats_to_hitim.html

docs/reference/run_limma_replicate.html

docs/reference/save_sestats.html

docs/reference/se_collapse_by_column.html

docs/reference/se_collapse_by_row.html

docs/reference/se_contrast_stats-1.png

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docs/reference/update_function_params.html

docs/reference/update_list_elements.html

docs/reference/validate_sedesign.html

docs/reference/voom_jam.html

docs/sitemap.xml

jamses.Rproj

man/check_sedesign.Rd man/choose_annotation_colnames.Rd man/contrast2comp.Rd man/contrast2comp_dev.Rd man/contrast_colors_by_group.Rd man/contrast_names_to_sedesign.Rd man/contrasts_to_factors.Rd man/contrasts_to_venn_setlists.Rd man/detect_heatmap_components.Rd man/draw_oneway_contrast.Rd man/draw_twoway_contrast.Rd man/ebayes2dfs.Rd

man/figures/README-plot_sedesign-1.png

man/filter_contrast_names.Rd man/fold_to_log2fold.Rd man/format_hits.Rd man/groups_to_sedesign.Rd man/handle_na_values.Rd man/heatmap_column_group_labels.Rd man/heatmap_se.Rd man/hit_array_to_list.Rd man/intercalate.Rd man/list2im_opt.Rd man/log2fold_to_fold.Rd man/make_block_arrow_polygon.Rd man/make_se_test.Rd man/mark_stat_hits.Rd man/matrix_normalize.Rd man/plot_sedesign.Rd man/point_handedness.Rd man/point_slope_intercept.Rd man/process_sestats_to_hitim.Rd man/run_limma_replicate.Rd man/save_sestats.Rd man/se_collapse_by_column.Rd man/se_collapse_by_row.Rd man/se_contrast_stats.Rd man/se_detected_rows.Rd man/se_normalize.Rd man/se_rbind.Rd man/se_to_rowcoldata.Rd man/sedesign_to_factors.Rd man/sestats_to_df.Rd man/sestats_to_dfs.Rd man/shortest_unique_abbreviation.Rd man/shrinkDataFrame.Rd man/shrink_df.Rd man/shrink_matrix.Rd man/sort_samples.Rd man/stack_contrasts.Rd man/strsplitOrdered.Rd man/sub_split_vector.Rd man/update_function_params.Rd man/update_list_elements.Rd man/validate_sedesign.Rd man/voom_jam.Rd

test_xlsx.xlsx

tests/testthat.R tests/testthat/test-contrast2comp.R tests/testthat/test-point_handedness.R tests/testthat/test-shrink_df.R

jmw86069/jamses documentation built on Nov. 4, 2024, 9:25 p.m.

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jmw86069/jamses
Jam SummarizedExperiment Stats

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Jam SummarizedExperiment Stats

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jmw86069/jamses Jam SummarizedExperiment Stats

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jmw86069/jamses
Jam SummarizedExperiment Stats

Files in jmw86069/jamses
Jam SummarizedExperiment Stats