Files in jmw86069/venndir
Directional Venn diagrams

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/JamPolygon.R R/Venndir-class.R R/venndir-angles.R R/venndir-base-polyclip.R R/venndir-conversion.R R/venndir-curate.R R/venndir-expand-range.R R/venndir-gridtext.R R/venndir-im.R R/venndir-label-fill-jp.R R/venndir-label-outside-jp.R R/venndir-label-style.R R/venndir-labels.R R/venndir-legend.R R/venndir-meme.R R/venndir-nudge-label.R R/venndir-overlap.R R/venndir-plotly.R R/venndir-poly-conversions.R R/venndir-polyclip.R R/venndir-polygon-areas.R R/venndir-printcolordf.R R/venndir-render-jp.R R/venndir-reposition-labels.R R/venndir-shapes.R R/venndir-shrinkdf.R R/venndir-test.R R/venndir-textvenn.R R/venndir-to-df.R R/venndir-utilities.R README.Rmd README.md TODO.md

_pkgdown.yml

docs/.DS_Store

docs/404.html

docs/TODO.html

docs/articles/index.html

docs/articles/venndir_gene_expression.html

docs/articles/venndir_gene_expression_files/figure-html/generic_1-1.png

docs/articles/venndir_gene_expression_files/figure-html/limma_3-1.png

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docs/articles/venndir_gene_expression_files/header-attrs-2.1/header-attrs.js

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/label_positioning_logic.html

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/polyclip_notes.html

docs/reference/JamPolygon-class.html

docs/reference/Rplot001.png

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docs/reference/Venndir-class.html

docs/reference/add_orientation_JamPolygon-1.png

docs/reference/add_orientation_JamPolygon.html

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docs/reference/area_JamPolygon.html

docs/reference/bbox_JamPolygon.html

docs/reference/bbox_polygon_list.html

docs/reference/buffer_JamPolygon.html

docs/reference/check_JamPolygon.html

docs/reference/check_Venndir.html

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docs/reference/counts2setlist.html

docs/reference/curate_venn_labels.html

docs/reference/degrees_to_adj-1.png

docs/reference/degrees_to_adj.html

docs/reference/diff_degrees.html

docs/reference/display_angles.html

docs/reference/draw_gridtext_groups.html

docs/reference/eulerr2polys.html

docs/reference/eulerr_to_JamPolygon.html

docs/reference/eulerr_to_polygon_list.html

docs/reference/expand_range.html

docs/reference/farthest_point_JamPolygon.html

docs/reference/figures/README-label_preset_1-1.png

docs/reference/figures/README-label_preset_1l-1.png

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docs/reference/figures/README-venndir_overlap-1.png

docs/reference/figures/README-venndir_overlap_p-1.png

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docs/reference/figures/README-vennitems_1-1.png

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docs/reference/find_venn_overlaps_JamPolygon.html

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docs/reference/find_vennpoly_overlaps.html

docs/reference/get_largest_polygon-1.png

docs/reference/get_largest_polygon.html

docs/reference/get_largest_polygon_list-1.png

docs/reference/get_largest_polygon_list.html

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docs/reference/get_sp_buffer.html

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docs/reference/get_venn_polygon_shapes.html

docs/reference/get_venn_shapes.html

docs/reference/gridtext_make_outer_box.html

docs/reference/gridtext_richtext_grob.html

docs/reference/has_point_in_JamPolygon.html

docs/reference/im2list.html

docs/reference/im_value2list.html

docs/reference/index.html

docs/reference/intersect_JamPolygon.html

docs/reference/intersect_polygon_list-1.png

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docs/reference/label_fill_JamPolygon-1.png

docs/reference/label_fill_JamPolygon.html

docs/reference/label_outside_JamPolygon.html

docs/reference/label_segment_JamPolygon.html

docs/reference/labelr_JamPolygon.html

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docs/reference/labelr_polygon_list.html

docs/reference/list2im_opt.html

docs/reference/list2im_signed.html

docs/reference/list2im_value.html

docs/reference/make_color_contrast-1.png

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docs/reference/make_color_contrast-4.png

docs/reference/make_color_contrast.html

docs/reference/make_venn_combn_df.html

docs/reference/make_venn_test.html

docs/reference/match_list.html

docs/reference/mean_degree_arc-1.png

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docs/reference/mean_degree_arc.html

docs/reference/mean_degrees.html

docs/reference/minus_JamPolygon.html

docs/reference/minus_polygon_list-1.png

docs/reference/minus_polygon_list.html

docs/reference/nearest_point_JamPolygon.html

docs/reference/nudge_polygon_coords-1.png

docs/reference/nudge_polygon_coords.html

docs/reference/nudge_polygon_list-1.png

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docs/reference/nudge_polygon_list.html

docs/reference/nudge_sp-1.png

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docs/reference/nudge_sp.html

docs/reference/nudge_venndir_label-1.png

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docs/reference/nudge_venndir_label-3.png

docs/reference/nudge_venndir_label.html

docs/reference/overlaplist2setlist-1.png

docs/reference/overlaplist2setlist-2.png

docs/reference/overlaplist2setlist.html

docs/reference/plot-JamPolygon-missing-method-1.png

docs/reference/plot-JamPolygon-missing-method-2.png

docs/reference/plot-JamPolygon-missing-method.html

docs/reference/plot.JamPolygon-1.png

docs/reference/plot.JamPolygon-2.png

docs/reference/plot.JamPolygon.html

docs/reference/plot_polygon_list-1.png

docs/reference/plot_polygon_list-2.png

docs/reference/plot_polygon_list.html

docs/reference/point_in_JamPolygon.html

docs/reference/polyclip_to_JamPolygon.html

docs/reference/polygon_areas.html

docs/reference/polygon_circles-1.png

docs/reference/polygon_circles.html

docs/reference/polygon_ellipses-1.png

docs/reference/polygon_ellipses.html

docs/reference/polygon_label_fill-1.png

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docs/reference/polygon_label_fill.html

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docs/reference/polygon_label_outside.html

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docs/reference/polygon_label_segment.html

docs/reference/polygon_list_labelr-1.png

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docs/reference/polygon_list_labelr.html

docs/reference/polygon_list_to_xy_list.html

docs/reference/print_color_df.html

docs/reference/render_venndir-1.png

docs/reference/render_venndir-10.png

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docs/reference/render_venndir.html

docs/reference/reposition_venn_gridtext_labels.html

docs/reference/rescale_coordinates-1.png

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docs/reference/rescale_coordinates.html

docs/reference/rescale_p.html

docs/reference/rescale_polygon_list-1.png

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docs/reference/sample_JamPolygon-1.png

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docs/reference/sample_JamPolygon.html

docs/reference/shrink_df.html

docs/reference/signed_counts2setlist-1.png

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docs/reference/signed_counts2setlist.html

docs/reference/signed_overlaps.html

docs/reference/simple_ellipse.html

docs/reference/sp_circles-1.png

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docs/reference/sp_percent_area.html

docs/reference/sp_polylabelr-1.png

docs/reference/sp_polylabelr-2.png

docs/reference/sp_polylabelr.html

docs/reference/split_JamPolygon.html

docs/reference/spread_degrees.html

docs/reference/textvenn.html

docs/reference/three_point_angle.html

docs/reference/to_basic.GeomRichText.html

docs/reference/to_basic.GeomTextBox.html

docs/reference/union_JamPolygon-1.png

docs/reference/union_JamPolygon-2.png

docs/reference/union_JamPolygon.html

docs/reference/union_polygon_list-1.png

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docs/reference/union_polygon_list.html

docs/reference/union_polygons-1.png

docs/reference/union_polygons.html

docs/reference/update_JamPolygon.html

docs/reference/venn_meme-1.png

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docs/reference/venn_meme.html

docs/reference/venndir-1.png

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docs/reference/venndir.html

docs/reference/venndir_label_style.html

docs/reference/venndir_legend-1.png

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docs/reference/venndir_legend.html

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docs/reference/venndir_legender.html

docs/reference/venndir_to_df-1.png

docs/reference/venndir_to_df.html

docs/reference/xy_list_to_coord_list-1.png

docs/reference/xy_list_to_coord_list-2.png

docs/reference/xy_list_to_polygon_list.html

docs/sitemap.xml

docs/venndir_todo.html

docs/venndir_workflow.html

label_positioning_logic.md

man/.DS_Store

man/JamPolygon-class.Rd man/Venndir-class.Rd man/add_orientation_JamPolygon.Rd man/area_JamPolygon.Rd man/bbox_JamPolygon.Rd man/bbox_polygon_list.Rd man/buffer_JamPolygon.Rd man/check_JamPolygon.Rd man/check_Venndir.Rd man/counts2setlist.Rd man/curate_venn_labels.Rd man/degrees_to_adj.Rd man/diff_degrees.Rd man/display_angles.Rd man/draw_gridtext_groups.Rd man/eulerr_to_JamPolygon.Rd man/eulerr_to_polygon_list.Rd man/expand_range.Rd man/farthest_point_JamPolygon.Rd

man/figures/README-label_preset_1-1.png

man/figures/README-label_preset_1l-1.png

man/figures/README-label_style_1-1.png

man/figures/README-nudge_1-1.png

man/figures/README-nudge_2-1.png

man/figures/README-venn_1-1.png

man/figures/README-venn_1e-1.png

man/figures/README-venn_1g-1.png

man/figures/README-venn_1l-1.png

man/figures/README-venndir_1-1.png

man/figures/README-venndir_agreement-1.png

man/figures/README-venndir_each-1.png

man/figures/README-venndir_each_p-1.png

man/figures/README-venndir_each_p2-1.png

man/figures/README-venndir_overlap-1.png

man/figures/README-venndir_overlap_p-1.png

man/figures/README-venndir_overlap_p2-1.png

man/figures/README-vennitems_1-1.png

man/figures/README-vennitems_1p-1.png

man/figures/README-vennitems_2-1.png

man/figures/README-vennitems_2p-1.png

man/find_venn_overlaps_JamPolygon.Rd man/get_largest_polygon_list.Rd man/get_venn_polygon_shapes.Rd man/get_venn_shapes.Rd man/gridtext_make_outer_box.Rd man/gridtext_richtext_grob.Rd man/has_point_in_JamPolygon.Rd man/im2list.Rd man/im_value2list.Rd man/intersect_JamPolygon.Rd man/intersect_polygon_list.Rd man/label_fill_JamPolygon.Rd man/label_outside_JamPolygon.Rd man/label_segment_JamPolygon.Rd man/labelr_JamPolygon.Rd man/labelr_polygon_list.Rd man/list2im_opt.Rd man/list2im_value.Rd man/make_color_contrast.Rd man/make_venn_combn_df.Rd man/make_venn_test.Rd man/match_list.Rd man/mean_degree_arc.Rd man/mean_degrees.Rd man/minus_JamPolygon.Rd man/minus_polygon_list.Rd man/nearest_point_JamPolygon.Rd man/nudge_polygon_coords.Rd man/nudge_polygon_list.Rd man/nudge_venndir_label.Rd man/overlaplist2setlist.Rd man/plot-JamPolygon-missing-method.Rd man/plot.JamPolygon.Rd man/plot_polygon_list.Rd man/point_in_JamPolygon.Rd man/polyclip_to_JamPolygon.Rd man/polygon_areas.Rd man/polygon_circles.Rd man/polygon_ellipses.Rd man/polygon_list_labelr.Rd man/polygon_list_to_xy_list.Rd man/print_color_df.Rd man/render_venndir.Rd man/reposition_venn_gridtext_labels.Rd man/rescale_coordinates.Rd man/rescale_polygon_list.Rd man/sample_JamPolygon.Rd man/shrink_df.Rd man/signed_counts2setlist.Rd man/signed_overlaps.Rd man/simple_ellipse.Rd man/split_JamPolygon.Rd man/spread_degrees.Rd man/textvenn.Rd man/three_point_angle.Rd man/to_basic.GeomRichText.Rd man/to_basic.GeomTextBox.Rd man/union_JamPolygon.Rd man/union_polygon_list.Rd man/update_JamPolygon.Rd man/venn_meme.Rd man/venndir.Rd man/venndir_label_style.Rd man/venndir_legender.Rd man/venndir_to_df.Rd man/xy_list_to_polygon_list.Rd polyclip_notes.md tests/testthat.R tests/testthat/test-converters.R tests/testthat/test-curate.R tests/testthat/test-overlaps.R tests/testthat/test-proportional.R tests/testthat/test-spatial.R tests/testthat/test-utility.R

venndir.Rproj

venndir_todo.md venndir_workflow.md

vignettes/.gitignore

vignettes/venndir_gene_expression.Rmd

jmw86069/venndir documentation built on June 15, 2024, 1:52 p.m.

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Directional Venn diagrams

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