add_kegg_up_down_link | add links for the KEGG enrichment table. |
batch_enrichment | enrichment for GO/KEGG |
batch_pheatmap | Do batch heatmap for interested gene sets. |
batch_t_test | do batch t.test for a matrix |
cc_plot | plot overall/within group mean correlation coefficient of... |
create_dup_exprSet | create the duplicated expression matrix |
create_example_exprSet | create expression matrix,rowname are unique genes, colname... |
create_genesets_list | create a list of gene sets for enzyme/protein complex/... |
createGSEAinput | create gct file and cls files |
do_DEG_2groups | Do differential expression analysis for the expression matrix |
downGSE | download the data from GEO database |
draw_boxplot_gene | draw boxplot for a specific gene's values between two groups |
format_DEG | write some files from the DEG results from topTable(limma) |
geneAnno | annotate gene name or map for entrez id or symbol |
get_GSE_links | Get the links for GSE studyID |
get_symbol_exprSet | extract the expression matrix from a eSet object |
GSEA | Main GSEA Analysis Function that implements the entire... |
hello | Hello, World! |
hyperGtest_jimmy | Hypergeometric Tests for GO/KEGG test by jimmy |
keggAnno | annotate KEGG pathway for entrez id or symbol |
pathway_heatmap | draw heatmap for a single pathway or a batch of pahways |
plot_ES_score | re-draw ES-score figures for GSEA |
probesetAnno | annotate entrez gene id for the given probeset |
pub_trend | visualization for the trend of reseach area based on some... |
QCexpressionMatrix | Do basic QC for a expression matrix. |
refreshMicroarrayData | extract probeset ID and entrez gene id from R packages |
refreshOrgHsData | extract gene IDs from org.Hs.eg.db |
rmDupID | remove duplicat gene entrez ID or symbol for a expression... |
update_kegg | update kegg data |
Volcanic_DEG | write some files from the DEG results from topTable(limma) |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.