createGSEAinput: create gct file and cls files

In jmzeng1314/humanid: gene id annotation

Description

create gct file and cls file for GSEA according the expression matrix and group information

Usage

createGSEAinput(prefix = "GSE1009", exprSet = example_exprSet, group_list,
  destdir = ".")

Arguments

prefix	The prefix for gct file and cls files.
exprSet	a expression matrix, which columns are sample,rows are HUGO gene symbols, or probeset ID .
group_list	a vector,as long as the col number for the expression matrix,which describe the group for the samples in exprSet
destdir	where to store the files just download.

Value

write 2 files which are the input for GSEA (gct and cls format)

Examples

#' createGSEAinput('GSE1009',exprSet,group_list)

jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.