pathway_heatmap: draw heatmap for a single pathway or a batch of pahways

Description Usage Arguments Value Examples

View source: R/pathway_heatmap.R

Description

you can point the pathway you are interested in or a list of related pathway ,such immune or sinal pathway

Usage

1
pathway_heatmap(exprSet, pathwayID = "00910", search = "NA", all = F)

Arguments

exprSet

a expression matrix, which columns are sample,rows are HUGO gene symbols.

pathwayID

a character just like 00910(means 'Nitrogen metabolism'),default:00910

search

Generate heatmap for the kegg pathway which related the character you search.

all

generate heatmap for all kegg pathway if set this parameter as TURE. default:F

Value

generate QC figures for expression matrix

Examples

1
pathway_heatmap(example_exprSet)

jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.