pathway_heatmap: draw heatmap for a single pathway or a batch of pahways

In jmzeng1314/humanid: gene id annotation

Description

you can point the pathway you are interested in or a list of related pathway ,such immune or sinal pathway

Usage

pathway_heatmap(exprSet, pathwayID = "00910", search = "NA", all = F)

Arguments

exprSet	a expression matrix, which columns are sample,rows are HUGO gene symbols.
pathwayID	a character just like 00910(means 'Nitrogen metabolism'),default:00910
search	Generate heatmap for the kegg pathway which related the character you search.
all	generate heatmap for all kegg pathway if set this parameter as TURE. default:F

Value

generate QC figures for expression matrix

Examples

pathway_heatmap(example_exprSet)

jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.