update_kegg: update kegg data
In jmzeng1314/humanid: gene id annotation
Description
It's not a automately function, please don't run it. it will read the files ind data folder, which is 'kegg2geneID.txt' and 'kegg_hierarchical.txt'
you must make sure the files exists in the data/KEGG_update folder.
It will process the files and store the GeneID2kegg_list,kegg2GeneID_list,keggID2geneID_df,kegg2name to the Rdata.
GeneID2kegg_list and kegg2GeneID_list are list which one key has multiple values.
keggID2geneID_df is a data.frame , 2 columns : 'gene_id','path_id'
kegg2name is a data.frame, which has 4 columns, which is :parent1 parent2 pathway_id pathway_name
Usage
1
update_kegg(refresh = F)
Arguments
refresh
Don't use this function if not neccessary
jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.
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Description
It's not a automately function, please don't run it. it will read the files ind data folder, which is 'kegg2geneID.txt' and 'kegg_hierarchical.txt' you must make sure the files exists in the data/KEGG_update folder. It will process the files and store the GeneID2kegg_list,kegg2GeneID_list,keggID2geneID_df,kegg2name to the Rdata. GeneID2kegg_list and kegg2GeneID_list are list which one key has multiple values. keggID2geneID_df is a data.frame , 2 columns : 'gene_id','path_id' kegg2name is a data.frame, which has 4 columns, which is :parent1 parent2 pathway_id pathway_name
Usage
1 | update_kegg(refresh = F)
|
Arguments
refresh |
Don't use this function if not neccessary |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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