batch_enrichment: enrichment for GO/KEGG

In jmzeng1314/humanid: gene id annotation

Description

enrichment for GO/KEGG

Usage

batch_enrichment(diff_gene_file, all_genes_file, diff_gene_vector,
  all_genes_vector, file = "T", prefix = "test", GOstats = F)

Arguments

diff_gene_file	A text file which contain just one column, gene HUGO symbol or entrez ID , no need for column name.
all_genes_file	the same to the diff_gene_file, contain more genes than it.
diff_gene_vector	A vector contail a list of gene HUGO symbol or entrez ID
all_genes_vector	the same to the diff_gene_vector, contain more genes than it.
prefix	The prefix for the output files.
GOstats	whether use GOstats or not , defaults:F

Value

write enrichment results into files.

Examples

#'  batch_enrichment('diff_gene_file.txt','all_genes_file.txt')

jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.