downGSE: download the data from GEO database
In jmzeng1314/humanid: gene id annotation
Description
Usage
Arguments
Value
Examples
Description
Given a GSE study ID, just like GSE1009, this function will download the eSet object and write the expression matrix and phenotype information.
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1009
Usage
1
downGSE(studyID = "GSE1009", destdir = ".")
Arguments
studyID
A standard study ID in GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1009
destdir
where to store the files just download.
Value
A expresstionSet,S4 object in R, which contain: assayData,phenoData,featureData
Examples
1
#' downGSE('GSE1009')
jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.
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Description Usage Arguments Value Examples
Description
Given a GSE study ID, just like GSE1009, this function will download the eSet object and write the expression matrix and phenotype information. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1009
Usage
1 | downGSE(studyID = "GSE1009", destdir = ".")
|
Arguments
studyID |
A standard study ID in GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE1009 |
destdir |
where to store the files just download. |
Value
A expresstionSet,S4 object in R, which contain: assayData,phenoData,featureData
Examples
1 | #' downGSE('GSE1009')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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