batch_pheatmap: Do batch heatmap for interested gene sets.

In jmzeng1314/humanid: gene id annotation

Description

extract the corresponding expression matrix for each gene set , and draw heatmap for the gene set expression matrix. The name of the gene set will be used for the name of the heatmap figure the rowname must be HUGO gene symbols we have prepared 3 genesets:protein_complex_genesets,enzyme_genesets,other_genesets

Usage

batch_pheatmap(exprSet, group_list, name = F, genesets, width = 800,
  height = 800)

Arguments

exprSet	a expression matrix, which columns are sample,rows are HUGO gene symbols.
group_list	a vector,as long as the col number for the expression matrix,which describe the group for the samples in exprSet
name	Whether to attach the gene name to the heatmap or not, default:F
genesets	a list of interested gene sets, each gene set is a vector of genes, the name will be used by out figures.

Value

generate heatmap figures for each gene sets.

Examples

#' batch_pheatmap(),batch_pheatmap()

jmzeng1314/humanid documentation built on May 19, 2019, 2:57 p.m.