Files in johannesnicolaus/ASURAT_source

Assisting Interpretable Classifications in Single-cell Transcriptomics

LICENSE.md R/KEGG.R R/RcppExports.R R/cell_ontology.R R/data.R R/disease_ontology.R R/gene_ontology.R R/get_db.R R/plot.R R/quality_control.R R/reactome.R R/seurat.R R/sign.R R/utils.R README.md inst/requirements.R man/asurat_add_qcmetrics.Rd man/asurat_quick_genefilter.Rd man/auto_find_marker_gene.Rd man/auto_find_marker_sign.Rd man/cerv_asurat.Rd man/classify_samples_hclustCutree_sign.Rd man/classify_samples_merlot_sign.Rd man/classify_samples_pam_sign.Rd man/classify_samples_seuratFindClusters_sign.Rd man/collect_CO.Rd man/collect_DO.Rd man/collect_GO.Rd man/collect_KEGG.Rd man/collect_Reactome.Rd man/compute_IC_CO.Rd man/compute_IC_DO.Rd man/compute_IC_GO.Rd man/compute_SemSim_sign.Rd man/compute_nswaps.Rd man/concatenate_obj_sign.Rd man/do_CalculateElasticTree_dmap.Rd man/do_CalculatePseudotimes_dmap.Rd man/do_CalculateScaffoldTree_dmap.Rd man/do_DiffusionMap_sign.Rd man/do_SignSpaceEmbedding_dmap.Rd man/do_cellTypeToGenes.Rd man/do_enrichGO_seurat.Rd man/do_groupGO.Rd man/do_keggGet.Rd man/do_pca_sign.Rd man/do_quickQC.Rd man/do_quickQC_sign.Rd man/do_simplifyGO_seurat.Rd man/do_tsne_sign.Rd man/do_umap_sign.Rd man/find_descendants.Rd man/find_marker_gene.Rd man/find_marker_sign.Rd man/format_CO.Rd man/format_DO.Rd man/format_GO.Rd man/format_KEGG.Rd man/format_Reactome.Rd man/get_CO.Rd man/get_DO.Rd man/get_GO.Rd man/get_KEGG.Rd man/get_Reactome.Rd man/get_db.Rd man/make_asurat_obj.Rd man/make_signxsample_matrix.Rd man/make_treeTable_CO.Rd man/manual_curation_sign.Rd man/manual_selection_sign.Rd man/pbmc_asurat.Rd man/plot_GOemapplot_seurat.Rd man/plot_bargraph_seurat.Rd man/plot_pcaEigen_seurat.Rd man/plot_tsne_nReads_seurat.Rd man/plot_tsne_seurat.Rd man/plot_tsne_signExpression_seurat.Rd man/plot_umap_seurat.Rd man/plot_umap_signExpression_seurat.Rd man/plot_variableFeatures_seurat.Rd man/process_001_seurat.Rd man/process_002_seurat.Rd man/reduce_sign.Rd man/select_sign.Rd man/separate_variables_sign.Rd man/trim_samples.Rd man/trim_variables.Rd