percentOverlaps: Overlap genomic regions

In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Description

Overlap genomic regions

Usage

percentOverlaps(query, subject, ignore_strand = TRUE, ...)

Arguments

query	a GRanges object
subject	a GRanges object
ignore_strand	wether ignore strands
...	pass to findOverlaps

Details

For every interval in query, it calculates the percent that is covered by subject.

Be careful with strand in your GRanges object!

Value

A numeric vector which has the same length as query.

Author(s)

Zuguang Gu <[e-mail]>

Examples

gr1 = GRanges(seqname = "chr1", ranges = IRanges(start = c(4, 10), end = c(6, 16)))
gr2 = GRanges(seqname = "chr1", ranges = IRanges(start = c(7, 13), end = c(8, 20)))
percentOverlaps(gr1, gr2)
percentOverlaps(gr2, gr1)

jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.