Man pages for jpbida/RRNA
Secondary Structure Plotting for RNA
| addBreaks | Internal Function - labels RNA structures taken from PDB with... |
| alignCoord | Alignment of secondary structure folds to 2 nucleotides. |
| aptPlotCT | RNA secondary structure plotting from CT files |
| backward | Internal function for moving through secondary structures |
| bplfile | Creates a bpl file from a coordinate file |
| circleCoord | Internal function for finding the coordinates of NT's in a... |
| coord2comp | Generates secondary structure components from a coordinate... |
| ct2coord | Generate coordinate file |
| ct2knet | creates a knet file from a CT file |
| ct2ss | Generates secondary structure components from a coordinate... |
| forward | Internal function for moving through secondary structures |
| fuzzy2comp | Generate components from hydrogen bond data extracted from a... |
| fuzzy2ct | Convert hydrogen bond data from RSIM 3D RNA structure into 2D... |
| genCords | Internal function that generates coordinates for a given loop... |
| genDB | Internal Function for creating component database |
| loadCoords | Loads a coordinate file into a data frame |
| loadCt | Loads a CT file into an R data frame |
| loopLength | internal function that determines the length of a loop |
| makeCt | make a CT file from a structure and sequence |
| pairScores | Identifies base-pairs from hydrogen bonding data |
| pseudoKnot | removes pseudoknots from a ct file |
| RNAPlot | Generic RNA Secondary Structure Plotting Function |
| rotateS | Internal function to rotate a single point |
| rotateV | internal function to rotate a vector of points |
| RRNA-package | RNA secondary structure ploting |
| stemCords | internal function that generates coordinates for a stem |
| transformFold | Internal function to translate and rotate a secondary... |
| translate | internal function for translating points |
| validCT | Validate a CT File |
