| loopLength | R Documentation | 
Used by RNAPlot to get the length of a loop
loopLength(input, start)
| input | CT file 
 | 
| start | Position of the first nucleotide in the the loop | 
Retuns a list contianing the output and stems
JP Bida
ct=makeCt("((((...((((..))))..((((...)))).))))","AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA")
out=loopLength(ct,4)
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