ct2coord: Generate coordinate file

In jpbida/RRNA: Secondary Structure Plotting for RNA

Generate coordinate file

Description

Creates a coordinate file from a CT file that has been loaded into a data frame

Usage

ct2coord(input)

Arguments

input

Data frame representing a ct file. Created from makeCt or loadCt

Value

Returns a coordinate file for the secondary structure represented in the CT file

Note

Pseudoknots sometimes cause trouble

Author(s)

JP Bida

See Also

RNAPlot

Examples

ct=makeCt("((((...(((((((....)))))))...((((...))))...))))",
          "CCCCAAAGGGGGGGAUUACCCCUCCUUUAAAAGGGUUUUCCCCCCC"
         )
coord=ct2coord(ct)
RNAPlot(coord)

jpbida/RRNA documentation built on April 28, 2024, 1:27 p.m.