ct2ss: Generates secondary structure components from a coordinate...
In jpbida/RRNA: Secondary Structure Plotting for RNA
ct2ss R Documentation
Generates secondary structure components from a coordinate file
Description
Split RNA secondary structures into closed components that can be used for 3D assembly into larger molecules.
Usage
ct2ss(dat, cleanup)
Arguments
dat
Dataframe from ctfile generated by loadCT
cleanup
TRUE/FALSE indicating if CT file should be cleaned up removing pseudoknots and multiple pairings
preserving the most base-pairs in a structure compatible with bracket notation.
Value
Secondary structure in bracket notation
Author(s)
JP Bida
jpbida/RRNA documentation built on April 28, 2024, 1:27 p.m.
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| ct2ss | R Documentation |
Generates secondary structure components from a coordinate file
Description
Split RNA secondary structures into closed components that can be used for 3D assembly into larger molecules.
Usage
ct2ss(dat, cleanup)
Arguments
dat |
Dataframe from ctfile generated by loadCT |
cleanup |
TRUE/FALSE indicating if CT file should be cleaned up removing pseudoknots and multiple pairings preserving the most base-pairs in a structure compatible with bracket notation. |
Value
Secondary structure in bracket notation
Author(s)
JP Bida
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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