API for js2264/cooleR
Analysing cool files in R with HiContacts
| Global functions | |
|---|---|
| .are_HiCExperiment | Man page Source code |
| .eigChr | Source code |
| .eigGCPhasing | Source code |
| .getDiamondScore | Source code |
| .is_comparable | Man page Source code |
| .is_same_bins | Man page Source code |
| .is_same_regions | Man page Source code |
| .is_same_resolution | Man page Source code |
| .is_same_seqinfo | Man page Source code |
| .is_symmetrical | Man page Source code |
| .saddle | Source code |
| Contacts | Man page Source code |
| HiContacts-plots | Man page |
| Ps | Man page |
| PsBreaks | Source code |
| `sdiag<-` | Source code |
| afmhotrColors | Man page Source code |
| aggregate,HiCExperiment-method | Man page |
| alignTrack | Source code |
| arithmetics | Man page |
| autocorrelate | Man page Source code |
| bbrColors | Man page Source code |
| bgrColors | Man page Source code |
| boost | Man page Source code |
| bwrColors | Man page Source code |
| checks | Man page |
| cisTransRatio | Man page Source code |
| coarsen | Man page Source code |
| contacts_yeast | Man page |
| contacts_yeast_eco1 | Man page |
| coolerColors | Man page Source code |
| coverage,HiCExperiment-method | Man page |
| despeckle | Man page Source code |
| detrend | Man page Source code |
| distanceLaw | Man page |
| distanceLaw,GInteractions,missing-method | Man page |
| distanceLaw,HiCExperiment,GRanges-method | Man page |
| distanceLaw,HiCExperiment,missing-method | Man page |
| distanceLaw,PairsFile,GRanges-method | Man page |
| distanceLaw,PairsFile,missing-method | Man page |
| divide | Man page Source code |
| getBorders | Man page Source code |
| getCompartments | Man page Source code |
| getDiamondInsulation | Man page Source code |
| getLoops | Man page Source code |
| ggHorizontalMatrix | Source code |
| ggMatrix | Source code |
| ggthemeHiContacts | Source code |
| localDistanceLaw | Man page Source code |
| merge,HiCExperiment,HiCExperiment-method | Man page |
| montage | Man page |
| montage,AggrHiCExperiment-method | Man page |
| normalize,HiCExperiment-method | Man page |
| palettes | Man page |
| plot4C | Man page Source code |
| plotMatrix | Man page |
| plotMatrix,AggrHiCExperiment-method | Man page |
| plotMatrix,GInteractions-method | Man page |
| plotMatrix,HiCExperiment-method | Man page |
| plotMatrix,matrix-method | Man page |
| plotPs | Man page Source code |
| plotPsSlope | Man page Source code |
| plotSaddle | Man page Source code |
| plotScalogram | Man page Source code |
| rainbowColors | Man page Source code |
| reexports | Man page |
| scalogram | Man page Source code |
| subsample | Man page Source code |
| tracks | Man page |
| virtual4C | Man page Source code |
