scalogram: Compute a scalogram of contacts
In js2264/cooleR: Analysing cool files in R with HiContacts

scalogram

R Documentation

Compute a scalogram of contacts

Description

Compute a scalogram of contacts

Usage

scalogram(x, dist_min = 0, nbins = 250, probs = c(0.25, 0.5, 0.75))

Arguments

`x`	A `HiCExperiment` object
`dist_min`	Minimum distance for interactions to be considered.
`nbins`	Number of bins to divide each chromosome
`probs`	Quantiles of interactions

Value

a tibble

Examples

contacts_yeast <- HiCExperiment::contacts_yeast()
pairsFile(contacts_yeast) <- HiContactsData::HiContactsData(
  'yeast_wt', format = 'pairs.gz'
)
scalo <- scalogram(contacts_yeast['II'])
scalo

js2264/cooleR documentation built on Oct. 3, 2024, 2:51 a.m.