plotSaddle: Plotting saddle plots

In js2264/cooleR: Analysing cool files in R with HiContacts

Plotting saddle plots

Description

Plotting saddle plots

Usage

plotSaddle(
  x,
  nbins = 50,
  limits = c(-1, 1),
  plotBins = FALSE,
  BPPARAM = BiocParallel::bpparam()
)

Arguments

x	a HiCExperiment object with a stored eigens metadata
nbins	Number of bins to use to discretize the eigenvectors
limits	limits for color map being used
plotBins	Whether to plot the distribution of bins on top of the plot
BPPARAM	a BiocParallel registered method

Value

ggplot

js2264/cooleR documentation built on Jan. 29, 2024, 10:47 p.m.