plotPs: Plotting a P(s) distance law

In js2264/cooleR: Analysing cool files in R with HiContacts

Plotting a P(s) distance law

Description

Plotting a P(s) distance law

Usage

plotPs(x, mapping, xlim = c(5000, 499000), ylim = c(1e-08, 1e-04))

plotPsSlope(x, mapping, xlim = c(5000, 499000), ylim = c(-3, 0))

Arguments

x	the output data.frame of distanceLaw function
mapping	aes to pass on to ggplot2
xlim	xlim
ylim	ylim

Value

ggplot

Examples

## Single P(s)

contacts_yeast <- contacts_yeast()
ps <- distanceLaw(contacts_yeast)
plotPs(ps, ggplot2::aes(x = binned_distance, y = norm_p))

## Comparing several P(s)

contacts_yeast <- contacts_yeast()
contacts_yeast_eco1 <- contacts_yeast_eco1()
ps_wt <- distanceLaw(contacts_yeast)
ps_wt$sample <- 'WT'
ps_eco1 <- distanceLaw(contacts_yeast_eco1)
ps_eco1$sample <- 'eco1'
ps <- rbind(ps_wt, ps_eco1)
plotPs(ps, ggplot2::aes(x = binned_distance, y = norm_p, group = sample, color = sample))
plotPsSlope(ps, ggplot2::aes(x = binned_distance, y = slope, group = sample))

js2264/cooleR documentation built on Jan. 29, 2024, 10:47 p.m.