tracks: Aligning tracks with HiCExperiment objects
In js2264/cooleR: Analysing cool files in R with HiContacts

tracks

R Documentation

Aligning tracks with HiCExperiment objects

Description

Aligning tracks with HiCExperiment objects

Usage

## S4 method for signature 'HiCExperiment'
coverage(x, use.pairs = FALSE, bin.size = resolution(x))

Arguments

`x`	A `HiCExperiment` object over a full genome
`use.pairs`	logical. Whether to use pairsFile to compute Hi-C coverage
`bin.size`	if `use.pairs == TRUE`, to which resolution

Value

A HiCExperiment object with 2 added columns in regions(x)

Examples

mcool_file <- HiContactsData::HiContactsData('yeast_wt', format = 'mcool')
hic <- import(mcool_file, format = 'mcool', resolution = 1000)
coverage(hic)

js2264/cooleR documentation built on Jan. 29, 2024, 10:47 p.m.