plotScalogram: Plotting scalograms
In js2264/cooleR: Analysing cool files in R with HiContacts
plotScalogram R Documentation
Plotting scalograms
Description
Plotting scalograms
Usage
plotScalogram(x, ylim = c(500, 1e+05))
Arguments
x
GRanges, the output of scalogram()
ylim
Range of distances to use for y-axis in scalograms
Value
ggplot
Examples
contacts_yeast <- HiCExperiment::contacts_yeast()
pairsFile(contacts_yeast) <- HiContactsData::HiContactsData(
'yeast_wt', format = 'pairs.gz'
)
scalo <- scalogram(contacts_yeast['II'])
plotScalogram(scalo)
js2264/cooleR documentation built on Jan. 29, 2024, 10:47 p.m.
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| plotScalogram | R Documentation |
Plotting scalograms
Description
Plotting scalograms
Usage
plotScalogram(x, ylim = c(500, 1e+05))
Arguments
x |
GRanges, the output of |
ylim |
Range of distances to use for y-axis in scalograms |
Value
ggplot
Examples
contacts_yeast <- HiCExperiment::contacts_yeast()
pairsFile(contacts_yeast) <- HiContactsData::HiContactsData(
'yeast_wt', format = 'pairs.gz'
)
scalo <- scalogram(contacts_yeast['II'])
plotScalogram(scalo)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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